Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0516
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   206   9e-54
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   204   3e-53
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   204   3e-53
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    36   0.029
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    28   5.8  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.8  
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa...    27   7.7  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  206 bits (503), Expect = 9e-54
 Identities = 97/182 (53%), Positives = 131/182 (71%), Gaps = 5/182 (2%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAA 212
           P+G+ + V ++++ V+GPRG L R+FKHL +D +++       R LK++ WFGS+K  A+
Sbjct: 13  PDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSAS 72

Query: 213 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 392
           +RT  SHV+N+I GVT+GF Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M 
Sbjct: 73  IRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEML 132

Query: 393 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVL 572
            GV +V S K KDE+I+EGN +E VS S ALI Q   VK KDIRKFLDG+YVSEK  + +
Sbjct: 133 DGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAV 192

Query: 573 DD 578
           ++
Sbjct: 193 EE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  204 bits (499), Expect = 3e-53
 Identities = 95/182 (52%), Positives = 133/182 (73%), Gaps = 5/182 (2%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAA 212
           P+ +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++K  A+
Sbjct: 13  PDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSAS 72

Query: 213 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 392
           +RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M 
Sbjct: 73  IRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEML 132

Query: 393 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVL 572
            GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V 
Sbjct: 133 DGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVE 192

Query: 573 DD 578
           ++
Sbjct: 193 EE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  204 bits (499), Expect = 3e-53
 Identities = 95/182 (52%), Positives = 133/182 (73%), Gaps = 5/182 (2%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKWFGSKKELAA 212
           P+ +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ WFG++K  A+
Sbjct: 13  PDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSAS 72

Query: 213 VRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 392
           +RT  SHV+N+I GVT+GF+YKMR VYAHFPIN         IEIRNFLGEK +R+V+M 
Sbjct: 73  IRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEML 132

Query: 393 PGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVL 572
            GVT+V S K KDE++++GN +E VS S ALI Q   VK KDIRKFLDG+YVSEK+ +V 
Sbjct: 133 DGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVE 192

Query: 573 DD 578
           ++
Sbjct: 193 EE 194


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 30/149 (20%), Positives = 67/149 (44%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC 227
           P+ +T+ ++ + + VKGP G L   +    V++       L+V+K   +++         
Sbjct: 54  PSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRANQMHGLFR 112

Query: 228 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 407
           +  +NM+ GV+KGF+ K+  V   +     T +G  ++     L   +   VKM    ++
Sbjct: 113 TLTDNMVVGVSKGFEKKLILVGVGYR---ATVDGKELV-----LNLGFSHPVKMQIPDSL 164

Query: 408 VNSPKQKDELIIEGNSLEDVSSSAALIQQ 494
               ++   + + G    ++   AA +++
Sbjct: 165 KVKVEENTRITVSGYDKSEIGQFAATVRK 193


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +3

Query: 303 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 482
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 483 LIQQSTTVKNK 515
            +QQST+V+ +
Sbjct: 762 ELQQSTSVRGR 772


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 448 PSMISS-SFCFGELTTVTPGAI 386
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from {Mus
           musculus} SP|P70704, {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1107

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 360 GEKYIRRVKMAPGVTVVNSPKQKDELI-IEGNSLEDVSSS---AALIQQSTTVKNKDIRK 527
           G+K    +++A     + SP+ K +L+ I+G + EDVS S     L  + T  + KD+  
Sbjct: 637 GDKQNTAIQIALSCNFI-SPEPKGQLLMIDGKTEEDVSRSLERVLLTMRITASEPKDVAF 695

Query: 528 FLDG 539
            +DG
Sbjct: 696 VIDG 699


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,815
Number of Sequences: 28952
Number of extensions: 264223
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)