Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8U1B8 Cluster: Putative uncharacterized protein PF1303...    34   2.8  
UniRef50_UPI0000DB7219 Cluster: PREDICTED: similar to Mekk1 CG77...    33   8.4  
UniRef50_A1ZWZ9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.4  

>UniRef50_Q8U1B8 Cluster: Putative uncharacterized protein PF1303;
           n=1; Pyrococcus furiosus|Rep: Putative uncharacterized
           protein PF1303 - Pyrococcus furiosus
          Length = 235

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 329 RQTAHEHTVHLMMSGYPWTPGIPGAEPSRCLSFLIDER 442
           R   H+     +  GY W P +P AEP R +  L++E+
Sbjct: 182 RVYVHDDIAANVKPGYYWLPAVPDAEPGRIVKILVEEQ 219


>UniRef50_UPI0000DB7219 Cluster: PREDICTED: similar to Mekk1
           CG7717-PB, isoform B; n=1; Apis mellifera|Rep:
           PREDICTED: similar to Mekk1 CG7717-PB, isoform B - Apis
           mellifera
          Length = 1209

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 406 LCPWYSWRPWVTTHHQVDRVLMGRLPIRS-IKKKHSGTKTG 287
           +C WY+    +T HHQ+   ++G+L +RS IK+KH    +G
Sbjct: 321 MCLWYN----MTIHHQLKLQILGKLLMRSHIKRKHDDGDSG 357


>UniRef50_A1ZWZ9 Cluster: Putative uncharacterized protein; n=1;
           Microscilla marina ATCC 23134|Rep: Putative
           uncharacterized protein - Microscilla marina ATCC 23134
          Length = 147

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 392 IPGAEPSRCLSFLIDERYCDLWAC*LQAKVDPARVP 499
           IP A+PS C + +IDE Y  +W C   +KV+    P
Sbjct: 8   IPKAQPSDCPTLIIDEAY-QVWLCYEDSKVEVKMTP 42


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,732,423
Number of Sequences: 1657284
Number of extensions: 13835500
Number of successful extensions: 34722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34693
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)