Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   3.3  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    27   3.3  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   5.8  
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|...    25   7.6  

>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 467 VSMPTDHNIARQSKTIGSGLALPLVF 390
           V+ PT+H  +   K IGSGL    VF
Sbjct: 256 VAQPTEHKHSSTFKKIGSGLGSAFVF 281


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 515 GSLAFPGHVLGRPSPEVSMPTDHNIARQSKTIGSGLALPLVFLASMGNHSS 363
           G++     VL   +PE+S+  D+N+AR  + +G+       +++ +  H S
Sbjct: 496 GNIIKAKSVLPDANPELSLLLDYNLARCEEELGNTSVASEAYVSILEKHPS 546


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 444 IVICGHADFRRRSTQHVSRKSQASLGLDRVIVNYLLINLLDKYNIKQYSLPK 599
           IV      F  +ST  V  ++  S  +D+ +++Y      +KY I   S PK
Sbjct: 215 IVEFSRGQFHIKST--VCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNPK 264


>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 229 KSWPMSVNTHRRRVHNSQLPPFLSQNVFFL 318
           K+WP   N   +++ N+QL     +N+FFL
Sbjct: 114 KNWPTESNIRSKQLLNTQLE---QENIFFL 140


>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 208 IVIFCFFKSWPMSVNTHRRRVHN 276
           I  F + K+WP S   H + +HN
Sbjct: 101 IEFFTYVKAWPGSKMDHFKEIHN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,672
Number of Sequences: 5004
Number of extensions: 56647
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)