Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     30   2.0  
08_02_0387 + 16585969-16586102,16586427-16586502,16586941-165869...    29   2.6  
07_03_0830 + 21801228-21801671,21802216-21803103                       29   3.4  

>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 531 LDQAPGKPGFSGTRAGSTFA*SQHAHRSQYRSSIKNDRQRLGS 403
           L  +PGKP  +G R  +  A S+   R  +   +++D   LGS
Sbjct: 239 LKPSPGKPNRTGARLTARAAPSEQTRRIDFHGGLQDDASILGS 281


>08_02_0387 +
           16585969-16586102,16586427-16586502,16586941-16586996,
           16587257-16587774,16587855-16588015,16588129-16588317,
           16588428-16588566,16588659-16588948
          Length = 520

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 244 SVNTHRRRVHNSQLPPFLSQNVFFLLTL*ADGP 342
           +V  HR  ++    PP L+ NV+ L  +  DGP
Sbjct: 254 TVKDHRGELYKKHFPPLLTDNVWRLRNIGKDGP 286


>07_03_0830 + 21801228-21801671,21802216-21803103
          Length = 443

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +1

Query: 361 DDEWLPMDARNTRGRAKPLPIVFD*RAIL*SVGMLTSGEGRPS 489
           DDE   M   N RGR+ PLP  F   A   +V   T+G  R S
Sbjct: 287 DDEVRVMFVVNARGRSPPLPAGFYGNAFAFAVAACTAGRLRDS 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,257
Number of Sequences: 37544
Number of extensions: 377848
Number of successful extensions: 835
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)