Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37865| Best HMM Match : IL12 (HMM E-Value=6.1)                      32   0.49 
SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)               28   6.0  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2)                      28   6.0  

>SB_37865| Best HMM Match : IL12 (HMM E-Value=6.1)
          Length = 236

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 347 HTVHLMMSGYPWTPGIPGAEPSRCLSFLID 436
           HTV L+   YPW PG P  +P   L  L D
Sbjct: 12  HTVLLLFVMYPWLPGAPLRQPRDLLQMLKD 41


>SB_44342| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-05)
          Length = 608

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +3

Query: 432 LTSDIVICGHADFRRRSTQHVSRKSQASLGLDRVIVNYLLINLLDKYNIKQYSLPKVR 605
           ++SD   C   D  + S   +  ++   LG+D     +LL+ +LD  N K YSL  V+
Sbjct: 157 ISSDNNNCSCLDEHKASPTIMDVETWGRLGMD-----FLLVQMLDTVNAKAYSLKPVK 209


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 154 FYYLHHKVQFIFMNNIIYYVLRNIHFRYSYYTY 56
           +YY HH   + +     YY     ++ Y YY Y
Sbjct: 127 YYYYHHYYYYYYYYYYYYYYYYYYYYYYYYYYY 159


>SB_7544| Best HMM Match : TFIIB (HMM E-Value=4.2)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 500 PGHVLGRPSPEVSMPTDHNIARQSKTIGSGLALPLVFLASMGNHSSSGGPCAHG 339
           P ++LG P PE++ PT   +  +       L       AS+G+  SS   C HG
Sbjct: 117 PYNILGGPVPEINAPT---LMPEFALFDRALTEYETSRASLGDEDSSNTLCNHG 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,388,043
Number of Sequences: 59808
Number of extensions: 428306
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)