Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.     30   1.3  
U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter...    28   5.3  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    28   5.3  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    28   7.0  
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen prot...    27   9.3  

>L12706-1|AAA17398.2|  360|Caenorhabditis elegans collagen protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = +2

Query: 365 MSGYPWTPGIPGAEPSRCLSFLIDERYCDLWAC*LQAKVDPARVPEKPGFPGA*SSY 535
           + G P   G PG   +   +  I ER  +   C L     PA VP  PGFPG    Y
Sbjct: 136 LPGAPGPDGAPGRPGTTPNASCIPERVFEPPPC-LPCPQGPAGVPGHPGFPGDPGEY 191


>U50191-3|AAK31557.1|  380|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 2 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +2

Query: 365 MSGYPWTPGIPGAEPSRCLSFLIDERYCDLWAC*LQAKVDPARVPEKPGFPGA*SSY 535
           + G P   G PG   +   +  I ER  +   C L     P  VP  PGFPG    Y
Sbjct: 136 LPGAPGPDGAPGRPGTTPNASCIPERVFEPPPC-LPCPQGPRGVPGHPGFPGDPGEY 191


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 WTPGIPGAEPSRCLSFLIDERYCDLWA-C*LQAKVDPARVPEKPGFPGA 523
           W   IP   PS   SFL+          C  Q++  PA  P  PG PGA
Sbjct: 54  WQAMIPTTRPSSGSSFLLGRNKRQAQCNCGAQSRGCPAGPPGPPGQPGA 102


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 380 WTPGIPGAEPSRCLSFLI--DERYCDLWAC*LQAKVDPARVPEKPGFPGA 523
           W   IP   PS   SFL+  ++R  +   C  Q++  PA  P  PG PGA
Sbjct: 54  WQAMIPTTRPSSGSSFLLGRNKRQAEC-NCGEQSRGCPAGPPGPPGQPGA 102


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = -3

Query: 531 LDQAPGKPGFSGTR-----AGSTFA*SQHAHRSQYRSSIKNDRQRLGSAPGIPGVHG 376
           LD  PG PG  G +     AG      +      Y        Q LG  PG PG  G
Sbjct: 283 LDGPPGYPGLKGQKGDLGDAGQRGKRGKDGVPGNYGEKGSQGEQGLGGTPGYPGTKG 339


>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
           protein K04H4.1a protein.
          Length = 1759

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/57 (31%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = -3

Query: 531 LDQAPGKPGFSGTR-----AGSTFA*SQHAHRSQYRSSIKNDRQRLGSAPGIPGVHG 376
           LD  PG PG  G +     AG      +      Y        Q LG  PG PG  G
Sbjct: 283 LDGPPGYPGLKGQKGDLGDAGQRGKRGKDGVPGNYGEKGSQGEQGLGGTPGYPGTKG 339


>AF022985-9|AAB69960.1|  314|Caenorhabditis elegans Collagen protein
           141 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +2

Query: 380 WTPGIPGAEPSRCLSFLIDERYCDLWA-C*LQAKVDPARVPEKPGFPGA 523
           W   IP   P    S L+          C  Q++  PA  P  PG+PGA
Sbjct: 61  WRSMIPSTRPVNAESLLLGRNKRQAQCNCGAQSQGCPAGPPGPPGYPGA 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,182
Number of Sequences: 27780
Number of extensions: 336952
Number of successful extensions: 970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)