Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   2.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   2.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   6.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.2  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 23  SIYYTRNTSHHISIVRVPKMYISQNVIYNIIHKYKLNFM 139
           ++YY+  +SH+++ V   +   SQ    N+ ++ K N +
Sbjct: 262 NLYYSALSSHNLNYVNTEQFVKSQYQANNVHYQGKENIL 300


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 267 SSSVCVHGHRPGLEKTKNNN 208
           S+S  VHGHR GL +    N
Sbjct: 40  SASNSVHGHREGLGRRHRYN 59


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 267 SSSVCVHGHRPGLEKTKNNN 208
           S+S  VHGHR GL +    N
Sbjct: 41  SASNSVHGHREGLGRRHRYN 60


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 513 KPGFSGTRAGSTFA*SQHAHRSQYRSSIKNDRQRLGSAPGIPG 385
           +PG S   + +  A  Q +  S +RSS++N +  + S   +PG
Sbjct: 22  QPG-SNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPG 63


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 362 SGGPCAHGPSAYKVNKKKTFWDKNGG 285
           +GG C  G    +    K  WDK  G
Sbjct: 70  AGGHCEKGVCICRKTSFKDLWDKRFG 95


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 MSGYPWTPGIPGAEPS 412
           MSG P  P +PG+ P+
Sbjct: 426 MSGMPPLPNMPGSMPT 441


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 671 NT*YRFRKKNLSLNLNYGNTTLTHLWQRILFNVIFIQ 561
           N  Y++   N + N N  N    +  +++ +N+I I+
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIE 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,870
Number of Sequences: 438
Number of extensions: 4102
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)