Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0515
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36450.1 68415.m04474 AP2 domain-containing protein low simil...    32   0.40 
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    27   8.6  

>At2g36450.1 68415.m04474 AP2 domain-containing protein low
           similarity to DREB1B GI:3738226 from [Arabidopsis
           thaliana]; contains Pfam profile PF00847: AP2 domain
          Length = 184

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 22/76 (28%), Positives = 31/76 (40%)
 Frame = -1

Query: 518 QGSLAFPGHVLGRPSPEVSMPTDHNIARQSKTIGSGLALPLVFLASMGNHSSSGGPCAHG 339
           Q  L FP  V   P+P    P D   A  S     G A   + +A+  N  +SG  C + 
Sbjct: 66  QAELNFPNSVSSLPAPTSMSPADIQAAAASAAAAFGAARDAIVMAN-NNSQTSGVACMN- 123

Query: 338 PSAYKVNKKKTFWDKN 291
            S+Y       F D++
Sbjct: 124 -SSYDNTNMNGFMDED 138


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase,
           putative / extra sporogenous cells (ESP) identical to
           extra sporogenous cells [Arabidopsis thaliana]
           gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
 Frame = +1

Query: 205 TIVIFCF---FKSWPMSVNTHRR----RVHNSQLPPFLSQNVFFL 318
           TI++F F    + W M+    +R    R+  S+L  F+ QN++FL
Sbjct: 838 TIIVFVFVFSLRRWAMTKRVKQRDDPERMEESRLKGFVDQNLYFL 882


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,009
Number of Sequences: 28952
Number of extensions: 294241
Number of successful extensions: 640
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)