Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    34   0.001
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    34   0.001
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    34   0.001
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.5  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   7.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 285 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 452
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 246 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 305

Query: 453 Q 455
           Q
Sbjct: 306 Q 306


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 285 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 452
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 194 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 253

Query: 453 Q 455
           Q
Sbjct: 254 Q 254


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 285 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 452
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 377 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 436

Query: 453 Q 455
           Q
Sbjct: 437 Q 437


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +3

Query: 264 PIVSPHDPCLQHAMPLYQKIIDQATVTANNSNGTISRGSIYCPEQLSVSSVIAA 425
           P  SP+D  +  A  LY     Q +  ++NS    S+G+    +Q   +SV+AA
Sbjct: 63  PQDSPYDASVAAACKLYSSEGQQNSNYSSNSKPDCSKGN---ADQNGYASVVAA 113


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 602 PRHTYCHKQTSCD 640
           P HT C K   CD
Sbjct: 33  PHHTSCDKYWKCD 45


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 602 PRHTYCHKQTSCD 640
           P HT C K   CD
Sbjct: 33  PHHTSCDKYWKCD 45


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 399 LSVSSVIAAMTRLCEQHYQEF 461
           LS+  V      L E HY+EF
Sbjct: 387 LSLLQVAQIFKNLLENHYEEF 407


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,261
Number of Sequences: 336
Number of extensions: 4212
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)