Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0512
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 31 0.13
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.92
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 1.2
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 28 1.2
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 28 1.6
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 27 3.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.5
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 25 8.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.6
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 609 TPIAISKHLVIPQAQINNNTSGRENYGSKTPTKDGSTTEN 728
+P+A+ + +PQA N E+ S +PT+ T EN
Sbjct: 535 SPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEEN 574
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.92
Identities = 20/81 (24%), Positives = 33/81 (40%)
Frame = +3
Query: 237 LYPVKIHILPIVSPHDPCLQHAMPLYQKIIDQATVTANNSNGTISRGSIYCPEQLSVSSV 416
+Y I P++S L I+ Q V+ +N+ G+I G+IY + S+
Sbjct: 417 IYGYSIGSAPLISLSSKQLHPRHHNTASIVVQVGVSLSNTFGSICGGAIYNITTVGFISL 476
Query: 417 IAAMTRLCEQHYQEFWCSLKC 479
+ + W SLKC
Sbjct: 477 CLGLAAVVYMQLIFMWGSLKC 497
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 468 SLKCGQLEARVQLFPAPQTVSHESLTATYT 557
S+ G + + P PQT+SHES+ YT
Sbjct: 96 SIYNGNFSENLGVQPNPQTISHESVNEEYT 125
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 173 ISYQNNLYRCLVSPFIHHELIHS 105
+SY + L +CL +PF HH I+S
Sbjct: 350 VSYVHLLLKCLENPFDHHYAIYS 372
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 42 IRTKLPQIEEGDK-TCIDSALLGVNQLVMNEWGH 140
++T +E DK TC+D + ++Q++ +WG+
Sbjct: 421 VQTIFENCKEKDKRTCLDEIINNMDQIICGQWGN 454
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 461 LVFSQMWSTRSPRSVVPCTSNCLA*KPNSHIH 556
+ S ++ + R ++ C SN L+ P+ H+H
Sbjct: 55 IFLSTLYIGKEERELINCLSNALSNNPSLHVH 86
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +3
Query: 219 SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIID--QATVTANNSNGTIS 371
SLP+ T Y IHI P+ A+ ++ ++D Q+ VT +S+ T S
Sbjct: 1959 SLPIETAYYYSIHIRPVSEFKFNWTSEAIS-WKDLVDNKQSLVTCQHSDNTFS 2010
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 654 INNNTSGRENYGSKTPTK 707
I NTSG EN G TP+K
Sbjct: 120 IQVNTSGEENKGGVTPSK 137
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 121 TS*FTPSNAESIHVLSPSSICGSLV 47
+S +TPS+ ES +L PSS+ +++
Sbjct: 125 SSEYTPSSTESSSLLDPSSVSSAIL 149
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 615 IAISKHLVIPQAQINNNTSGRENYGSKTPTKDGSTTENIT 734
+A K+L + Q N N + E++ S PT G + +N T
Sbjct: 1585 VASQKNLTV---QTNTNNAAMESFYSDRPTSSGPSYQNRT 1621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,555
Number of Sequences: 5004
Number of extensions: 69164
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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