Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1008 - 23271680-23273045,23273123-23273568                       30   1.7  
03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    29   2.9  
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670...    29   3.9  
05_03_0263 + 11234850-11235044,11235413-11237341                       28   6.8  
07_03_0281 - 16221526-16221624,16221935-16221986,16222071-162221...    28   9.0  
04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072     28   9.0  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   9.0  

>07_03_1008 - 23271680-23273045,23273123-23273568
          Length = 603

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +3

Query: 264 PIVSPHDPCLQHAMPLYQKIIDQATVTANNSNGTISRGSIYCPEQ---LSVSSVIAAMTR 434
           P++  + P L+    LY   +   T T        +  S+Y  EQ   ++++        
Sbjct: 145 PVLKLYVPGLEKGKGLYFMFVKSETKTRGGLTAWFALTSVYKSEQFKSMAIAYTSPTAAI 204

Query: 435 LCEQHYQEFWCSLKCG 482
           LCE  +Q  +  + CG
Sbjct: 205 LCEDAFQSMYAQMVCG 220


>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 138 HQTPIQIILITDGSSGVGAIGRNRIIQSLPL--PTLYPVKIHILPIVSPH-DPCLQHAMP 308
           H    QI+LITDG  G+ A   +   +S PL   T   V ++  P V      CLQH+  
Sbjct: 235 HARDSQILLITDGDDGMDAGKCSNRAESAPLNDKTKSLVLVNYFPSVPVKVTACLQHSKS 294

Query: 309 L 311
           L
Sbjct: 295 L 295


>07_03_0151 -
           14465479-14465675,14466280-14466401,14466934-14467081,
           14467146-14467167,14467299-14467393,14467395-14467438,
           14467750-14467841,14467911-14467982,14468188-14468229,
           14468333-14468494,14468631-14468683,14468808-14468925,
           14468974-14469150,14469573-14469639,14470195-14470273,
           14473805-14473862,14474257-14474346,14474429-14474540,
           14474649-14474912,14475361-14475463,14476200-14476278,
           14476748-14476852
          Length = 766

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 240 YPVKIHILPIVSPHDPCLQHAMPLYQKIIDQA 335
           +  ++ +LP+ +  +PC++HA+ L Q  ++ A
Sbjct: 125 FHTELELLPVTALENPCIKHAVELEQSFMEGA 156


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +3

Query: 351 NSNGTISRG-SIYCPE--QLSVSSVIAAMTRLCEQHYQEFWCSLKCGQLEARVQLFPAPQ 521
           +S GT  RG ++Y     +LS  S    M     ++   FW   + G  +  V  F   Q
Sbjct: 388 SSRGTRRRGITVYAMHLVELSERSSAINMVHKARRNGMPFWNRRRNGDGDQLVVAFETYQ 447

Query: 522 TVSHESLTATYTLSNQLHII 581
            +SH S+ A   +S+ LH I
Sbjct: 448 QLSHVSIRAMTAISD-LHTI 466


>07_03_0281 -
           16221526-16221624,16221935-16221986,16222071-16222165,
           16222347-16222398,16222483-16222611,16222748-16222812
          Length = 163

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 624 SKHLVIPQAQINNNTSGRENYGSKTPTKDGSTTENI 731
           S++ +I +A+   N++  +    K   KDGS TENI
Sbjct: 10  SENTLITKAEDKRNSNNEDTVYDKEYEKDGSPTENI 45


>04_04_0804 + 28171110-28171176,28171829-28172317,28172384-28173072
          Length = 414

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 676 LPEVLLFIWACGITRCLLMAIGVPRSC 596
           LPE L     C    C  +A GVPRSC
Sbjct: 47  LPEALAVADVCKSWCCAAIAAGVPRSC 73


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 318 KIIDQATVTANNSNGTISRGSIYCPEQLSVSSVIAAMTRLCEQHYQEF 461
           K++   T  A+ SNG + RGS YC + +++   +    R+    Y++F
Sbjct: 303 KLLKFGTKVASGSNGDLFRGS-YCSQDVAIK--VVRPERISADMYRDF 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,694,087
Number of Sequences: 37544
Number of extensions: 424164
Number of successful extensions: 1042
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)