Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                      120   9e-28
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)                    29   5.2  
SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)                   28   6.9  
SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)                 28   9.1  

>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score =  120 bits (290), Expect = 9e-28
 Identities = 80/251 (31%), Positives = 129/251 (51%), Gaps = 18/251 (7%)
 Frame = +3

Query: 6   DVAVPFTKYFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMNEWGHQTPIQIILITDGSSG 185
           ++AVPFT+ ++ ++     ++  DKTC ++AL GV   V+ EWG   P+QIIL+TDGS G
Sbjct: 63  EIAVPFTRDYELLKQGCMSVDVYDKTCFENALTGVAAHVVEEWGTSVPVQIILVTDGSLG 122

Query: 186 VGAIGRNRIIQ------SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIIDQATVTA 347
            G      ++       + PLP  +P K+H++ + +P +  +     L+Q++ D      
Sbjct: 123 SGVGSLKELLDHRSENANRPLPFPFPSKLHVVCVANPAE--MTGNFLLFQQLCDM----- 175

Query: 348 NNSNGTISRGSIYCPE-QLSVSSVIAAMTRLCEQHYQEFWCSLKCGQLEARVQLFPAPQ- 521
              NG    GS+Y PE  +SV SV     RL + HY  +   L CG L +++ L P P  
Sbjct: 176 ---NGL--GGSVYVPEAPISVHSVQNCFLRLAQTHYISYEGVLNCGHLSSKITLSPPPDF 230

Query: 522 TVSHESLTATY----------TLSNQLHIIGFVQQQDLGTPIAISKHLVIPQAQINNNTS 671
           +VS  ++  +Y             N+++I GF+   D+ +P +IS+HLVIP   I  +  
Sbjct: 231 SVSWNTVLQSYRKDRKENKIRRFPNEINICGFLDTVDVSSPASISRHLVIP---IGKDGE 287

Query: 672 GRENYGSKTPT 704
           G      K P+
Sbjct: 288 GAPEDDGKAPS 298


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 465 CSLKCGQLEARVQLFPAPQTVSHESL 542
           C LKC QL+ +    P P T S ESL
Sbjct: 640 CKLKCVQLKRQASTPPPPPTTSSESL 665


>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 482 STRSPRSVVPCTSNCLA*KPNSHIHSIQSVAYHWICTATRPRHTYCHK 625
           +T+ P   V C SNCL+   ++   ++Q V     C++  P HT+  K
Sbjct: 293 ATKPPEYNVTCVSNCLSRMKSTSKLAVQRVCKQASCSS--PAHTFSWK 338


>SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019)
          Length = 283

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 51  KLPQIEEGDKTCIDSALLGVNQLVMNEWG---HQTPIQIILITDGSSGVGAIGRNRIIQS 221
           K+  +  G +T  D AL  VN+ + +  G   +  P  +++ITDG +   +   + ++Q 
Sbjct: 155 KIEYLPGGTRT--DLALKKVNEDIFSPMGGARNDVPQVLVVITDGKTNQRSEPYSSVLQP 212

Query: 222 LPLPTLYP 245
           L +  LYP
Sbjct: 213 LKVRILYP 220


>SB_39661| Best HMM Match : KOW (HMM E-Value=1.1e-07)
          Length = 487

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
 Frame = +3

Query: 408 SSVIAAMTRLCEQHYQEFWCSLK-CGQLEARVQLFPAPQTVSHESLTATYTLSNQLHIIG 584
           +S+I    R+C+  Y+ +   +K   +  ARV+L    +T+S +     + +S    +  
Sbjct: 144 TSLIMQTVRICQGPYKGYIGIVKDATETTARVELHSNCKTISVDRSRLAH-VSGPAKVGA 202

Query: 585 FVQQQDLGTPIAISKHLVIPQAQINNNTSGREN-YGSKTPTKDGSTT 722
            +  +   TP+  S+    P +Q  +  + R   YGS+TPT DGS T
Sbjct: 203 SLHSR---TPMYGSQ---TPGSQTPSYAASRTPMYGSQTPTHDGSRT 243


>SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)
          Length = 349

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 211 ILFLPIAPTPLLPSVIKIICIGVWCPHSFITS*FTPSNAE-SIHVLSPSSICGSLVLILS 35
           +L L I P P L      I + +   H+FI S   P N E +IH L   ++    +L+L 
Sbjct: 184 LLLLHIIPFPFLAFAYIRIFVQIRRQHNFIRSHIGPGNRETNIHELRTVTV---FILMLC 240

Query: 34  KYL 26
            YL
Sbjct: 241 AYL 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,519,066
Number of Sequences: 59808
Number of extensions: 521371
Number of successful extensions: 1222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)