Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    26   1.4  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    24   5.7  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   7.5  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   9.9  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   9.9  

>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 612 PIAISKHLVIPQAQINNNTSGRENYGSKTPTK 707
           P A+S H       INNN++GR N+ +K  T+
Sbjct: 38  PSAVSPHQ--SSFMINNNSTGRTNFTNKQLTE 67


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 600 DLGTPIAISKHLVIPQAQINNNTSGRENYGSKTPTKDGST 719
           +L  P    KH ++P   + +   G   +  K+PTK+ +T
Sbjct: 853 ELKKPKDFRKHSLLPLNNVFDRIKGALPHLKKSPTKEDAT 892


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 435 LCEQHYQEFWCSLKCGQLEARV-QLFPAP 518
           L  Q   E+WCS+   +L+ +V ++F  P
Sbjct: 517 LSRQPAPEYWCSVAYFELDTQVGEMFKVP 545


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +3

Query: 447 HYQEFWCSLKCGQLEARV-QLFPAPQ 521
           H   FWCS+   +L  RV + F A Q
Sbjct: 308 HEPTFWCSISYYELNLRVGETFHASQ 333


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 6   DVAVPFTKYFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMNEWGHQ 143
           DVA     +F S  T L  IE+G     D +LL V++   N +G Q
Sbjct: 118 DVASADVLFFGSETTLLQYIEQGTVRVQDISLLIVDECHKN-YGRQ 162


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 805,682
Number of Sequences: 2352
Number of extensions: 16752
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)