Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC007991-1|AAH07991.1|  518|Homo sapiens chromosome 15 open read...   116   9e-26
AK027475-1|BAB55140.1|  518|Homo sapiens protein ( Homo sapiens ...   113   8e-25

>BC007991-1|AAH07991.1|  518|Homo sapiens chromosome 15 open reading
           frame 44 protein.
          Length = 518

 Score =  116 bits (279), Expect = 9e-26
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 11/226 (4%)
 Frame = +3

Query: 6   DVAVPFTKYFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMNEWGHQTPIQIILITDGSSG 185
           ++ VPFT+ +++++  L  +++ DKTC++SAL+GV  +V  EWG   P Q++L+TDG  G
Sbjct: 61  ELMVPFTRDYNTLQEALSNMDDYDKTCLESALVGVCNIVQQEWGGAIPCQVVLVTDGCLG 120

Query: 186 VG-------AIGRNRIIQS--LPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIIDQAT 338
           +G          +N+  +S   PLP  +P K++I+ + +  +     ++   +++ID   
Sbjct: 121 IGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQSTDSLECLERLID--- 177

Query: 339 VTANNSNGTISRGSIYCPEQLSVSSVIAAMTRLCEQHYQEFWCSLKCGQLEARVQLFPAP 518
              NN  G I   +I  P  L + +V +   +L +  Y  F   LKCG L A VQ+FP P
Sbjct: 178 --LNNGEGQIF--TIDGP--LCLKNVQSMFGKLIDLAYTPFHAVLKCGHLTADVQVFPRP 231

Query: 519 Q--TVSHESLTATYTLSNQLHIIGFVQQQDLGTPIAISKHLVIPQA 650
           +   V  E       ++  L I+GF+   D+ +P  +S+HLV+P A
Sbjct: 232 EPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIA 277


>AK027475-1|BAB55140.1|  518|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14569 fis, clone NT2RM4000514. ).
          Length = 518

 Score =  113 bits (271), Expect = 8e-25
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 11/226 (4%)
 Frame = +3

Query: 6   DVAVPFTKYFDSIRTKLPQIEEGDKTCIDSALLGVNQLVMNEWGHQTPIQIILITDGSSG 185
           ++ VPFT+ +++++  L  +++ DKTC++SAL+GV  +V  EWG   P Q++L+TDG  G
Sbjct: 61  ELMVPFTRDYNTLQEALSNMDDYDKTCLESALVGVCNIVQQEWGGAIPCQVVLVTDGCLG 120

Query: 186 VG-------AIGRNRIIQS--LPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIIDQAT 338
           +G          +N+  +S   PLP  +P K++I+ + +  +     ++   +++I    
Sbjct: 121 IGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQSTDSLECLERLI---- 176

Query: 339 VTANNSNGTISRGSIYCPEQLSVSSVIAAMTRLCEQHYQEFWCSLKCGQLEARVQLFPAP 518
              NN  G I   +I  P  L + +V +   +L +  Y  F   LKCG L A VQ+FP P
Sbjct: 177 -YLNNGEGQIF--TIDGP--LCLKNVQSMFGKLIDLAYTPFHAVLKCGHLTADVQVFPRP 231

Query: 519 Q--TVSHESLTATYTLSNQLHIIGFVQQQDLGTPIAISKHLVIPQA 650
           +   V  E       ++  L I+GF+   D+ +P  +S+HLV+P A
Sbjct: 232 EPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIA 277


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,752,382
Number of Sequences: 237096
Number of extensions: 2518868
Number of successful extensions: 4725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4719
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)