Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.5  
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   4.6  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -2

Query: 94  ESIHVLSPSSICGSLVLILSK 32
           E+ + +SP S+CGS+V+ILSK
Sbjct: 123 ENFYDISPFSLCGSIVVILSK 143


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 264 PIVSPHDPCLQHAMPLYQKIIDQATVTANNSNGTISRGSIYCPEQLS---VSSVIAAMTR 434
           P  +P+D C    +PLY K+ID+A   +NN      +   +  EQ S       + A   
Sbjct: 667 PYPTPYDKCSSQLLPLY-KLIDEA---SNNKLQFFIKCVAHSQEQNSKCYAPKKMRAQEV 722

Query: 435 LCEQHYQEFWCSLKCGQLE 491
           +CE    E W S  C QLE
Sbjct: 723 ICEN--LEVWSSY-CRQLE 738


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 24  TKYFDSIRTKLPQIEEGDKTCIDSALLGVNQ---LVMNEWGHQTP 149
           +KY D    K   +++G+  C+DS    VN+   LV +E+G   P
Sbjct: 3   SKYDDDREQKRRALKDGEWACVDSKCAKVNEESLLVCDEYGKPKP 47


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 94  ESIHVLSPSSICGSLVLILSK 32
           E  +  SP S+CGS+V+ILSK
Sbjct: 180 EKFYDNSPFSVCGSIVVILSK 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,473
Number of Sequences: 27780
Number of extensions: 389594
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)