Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0512
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.99 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.3  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    21   9.2  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   9.2  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   9.2  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 639  IPQAQINNNTSGRENYGSKTPTKDGSTTENI 731
            I +A+ + +     NYG     KDG TTE +
Sbjct: 1883 ISEAECDRDQLVNRNYGVNARGKDGMTTEEM 1913


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 372 RGSIYCPEQLSVSSVIAAMTRLCEQHYQEFWCSLKCGQLEARVQLFPAPQTVSHESLTAT 551
           R S +C + + +  +  +   +    Y+    S K   L AR    P P  V   SLT  
Sbjct: 147 RSSEFCGKNIGMKRIFTSSQNIAVIEYR-IPKSGKGFSLFARFLKNPRPCNVLATSLTEP 205

Query: 552 YTLSN 566
           YTL N
Sbjct: 206 YTLRN 210


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 609 TPIAISKHLVIPQAQINNNTS 671
           TP   S+HLV+P+ + N  TS
Sbjct: 252 TPELYSEHLVVPEIEDNLETS 272


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 135 GHQTPIQIILITDGSSGVGAIGRNRIIQSLP 227
           GH   I     TDGS     + R R+I   P
Sbjct: 88  GHVVTINETTYTDGSDDYSTLIRVRVIDVRP 118


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 135 GHQTPIQIILITDGSSGVGAIGRNRIIQSLP 227
           GH   I     TDGS     + R R+I   P
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRP 166


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 135 GHQTPIQIILITDGSSGVGAIGRNRIIQSLP 227
           GH   I     TDGS     + R R+I   P
Sbjct: 136 GHVVTINETTYTDGSDDYSTLIRVRVIDVRP 166


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 135 GHQTPIQIILITDGSSGVGAIGRNRIIQSLP 227
           GH   I     TDGS     + R R+I   P
Sbjct: 136 GHVVAINETTYTDGSDDYSTLIRVRVIDVRP 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,185
Number of Sequences: 438
Number of extensions: 5317
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)