Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0511
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 40 0.001
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 37 0.012
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 36 0.037
04_04_0981 + 29912275-29912814 31 0.80
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 1.4
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 5.6
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 5.6
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 7.4
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 7.4
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 27 9.8
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 27 9.8
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 377 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 556
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 557 SSHTT 571
S T
Sbjct: 190 QSIVT 194
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 401 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 571
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVT 162
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 35.5 bits (78), Expect = 0.037
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = +2
Query: 233 LALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHY 412
L LGV+A ++ Q + +G + ++ Y + N + + L + + H
Sbjct: 181 LKLGVMAADERISQRIQEGITESFAVKDVRGYSTKKNLNPSPCDPVYKLNKIAMNGDRHK 240
Query: 413 LLSAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 544
LL + + + Y + E K+ K+SD WE I + T R G
Sbjct: 241 LLEKNGIKTVGDFLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG 291
>04_04_0981 + 29912275-29912814
Length = 179
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 148 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 315
S + + R+ I R + G+ S +G G GRG +++ + RP+ + F+ A
Sbjct: 59 SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117
Query: 316 LQRVLRPIQGQPRCSERTEGISLTVFETFLP 408
RV+ G R+ +S T ET P
Sbjct: 118 SDRVVEVDDG--AALARSSSVSATAVETRAP 146
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 175 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 291
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 130 QYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKS 309
QY + T A++I S R + +Y G+ + + CA RGRL E R ++
Sbjct: 839 QYRQQTKAAVIIQSYCRSYLAHSQYMGL--KKAAITTQCAWRGRLARRELRKLKMAAKET 896
Query: 310 AALQRVLRPIQGQ 348
ALQ ++ Q
Sbjct: 897 GALQAAKNKLEKQ 909
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 159 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 248
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 223 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 375
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +2
Query: 239 LGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLL 418
LGV+A ++ + + +G + ++ Y + N + + L+ + H LL
Sbjct: 184 LGVMAADERISERIQEGITESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLL 243
Query: 419 SAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTI 511
+ + + Y + + K+ K+SD W+ I
Sbjct: 244 EQNGIKTVEDFLSFYNKSPDDLRKILGKISDQDWDLII 281
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +1
Query: 394 ETFLPLSPVGLLLQQLPDEQGRI----REALQEIIGRFV 498
+ FLP++ +G ++++ E G+I +E++QE + F+
Sbjct: 24 DRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFI 62
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +1
Query: 304 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFL--PLSPVGLLLQQLP--DEQGRIREA 471
K A LQRV+R ++ Q R S G + T+L P L +L +E+ +R
Sbjct: 295 KKAKLQRVIRSMKRQQRKSTEDTGSNYYSPLTYLKDPQGFAEKLFSRLQKCNERFEVRMM 354
Query: 472 LQEIIGRFVGENH 510
+ ++I R +G +H
Sbjct: 355 MLKVIARTIGLHH 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,064
Number of Sequences: 37544
Number of extensions: 330884
Number of successful extensions: 900
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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