Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0511
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.029
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.12 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.20 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.27 
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   5.7  
SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   7.6  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   28   7.6  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +2

Query: 191 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 352
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +1

Query: 211 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 333
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 203 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 352
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 404 YHYLLSASYFNNYQTNREGFAKLFRKLSDDSWE 502
           Y YL  A +F+    N  GF K F+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 422 ASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 550
           A++F     +  GFA  F+K +++ +      ++ + KRGG++
Sbjct: 1   AAHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRGGRV 43


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 488 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 583
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_18191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 380 ASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDD 493
           +++ L    HYL S + F NYQ   +G   LF++  D+
Sbjct: 326 STILLNAGLHYLESTN-FTNYQRLIDGIVLLFKRAKDE 362


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 202 YEGVCSHRCLSGSGCAGRGRLML 270
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/82 (25%), Positives = 34/82 (41%)
 Frame = +1

Query: 304 KSAALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQEI 483
           +S +  R   PI G+     R  G    +  +  PLSP   ++    D   R R  LQ +
Sbjct: 119 RSKSPVRSTSPILGRSSSPSRRGGSPSRILNSS-PLSPSKQVVDGDNDTVQRQRRELQLL 177

Query: 484 IGRFVGENHWSHKARH*EGWED 549
           IG     + +SH  +    W++
Sbjct: 178 IGELKDRDRFSHWKKDVRDWKE 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,593,181
Number of Sequences: 59808
Number of extensions: 378397
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)