Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0511
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    32   0.29 
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ...    31   0.88 
At5g17220.1 68418.m02018 glutathione S-transferase, putative           30   1.2  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    29   2.0  
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    29   2.7  
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin...    28   4.7  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    28   4.7  
At2g06200.1 68415.m00682 expressed protein                             28   4.7  
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing...    27   8.2  
At1g68670.1 68414.m07846 myb family transcription factor contain...    27   8.2  

>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 401 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 562
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++   S
Sbjct: 112 SYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQS 165


>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 401 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 550
           SY Y    +YF+      +G AK F++ S +  E    L+++  KRGG++
Sbjct: 110 SYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNKRGGRV 159


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 326 YYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSD-DSWE 502
           Y  +   N  +A E   +A L    +  YL+S +  N     R  F + + ++SD  SW+
Sbjct: 147 YNNRLSSNRFLAGEEFTMADLTHMPAMGYLMSITDINQMVKARGSFNRWWEEISDRPSWK 206

Query: 503 KTIGLIKH 526
           K + L  H
Sbjct: 207 KLMVLAGH 214


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 362 NELKALASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKT 508
           NE    AS+ L R  + L S  Y N+Y T R+G  + +  + +D+W KT
Sbjct: 218 NEWFTHASVSLDRKVYALNSREYMNSYDT-RDGSYQRY-TIPEDNWWKT 264


>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 401 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSS 562
           SY Y    +YF+      +GFAK F   S +        +++  KRGG++   S
Sbjct: 104 SYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQS 157


>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
           [Arabidopsis thaliana] GI:1246401, GI:8163920
          Length = 255

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = +2

Query: 269 YQNVDQGCRRTLSLP---HCSAYYGQFKD-NHVVANELKALASLYLKRSYHYLLSASYFN 436
           +Q  ++  +  L++P   H S    +F D +  V NE     ++    SY Y    +YF+
Sbjct: 64  FQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQ---INVEYNVSYVYHSMYAYFD 120

Query: 437 NYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 550
                 +G AK F++ S++        +++  +RGG++
Sbjct: 121 RDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRV 158


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 431  FNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRG 541
            +N +  NR G      K  +  WEK IG ++H  KRG
Sbjct: 1729 WNKWIYNRGGIGVPPEKSWESWWEKEIGHLRHSGKRG 1765


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 543 PPLLVTCFMRPMVFSHESSDNFLKSFANPSL 451
           PP L+    RP +FS  SS +   SF +P+L
Sbjct: 32  PPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62


>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 287

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 482 LSDDSWEKTIGLIKHVTK 535
           L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 352 RCSERTEGI-SLTVFETFLPLSPVGLLLQQLPDEQ 453
           +CSE+T  +    VFE F+P+  +  L +++ +E+
Sbjct: 63  QCSEQTTSVCGGPVFEEFIPIKKISSLCEEVQEEE 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,810,331
Number of Sequences: 28952
Number of extensions: 263848
Number of successful extensions: 711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)