Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0510
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    40   0.048
UniRef50_Q3YS81 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 40.3 bits (90), Expect = 0.048
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +1

Query: 160 FGSLCVLCRMFYGECCEELSDII 228
           FGSLC+L RMF+GEC EEL ++I
Sbjct: 877 FGSLCILYRMFHGECSEELFEMI 899


>UniRef50_Q3YS81 Cluster: Putative uncharacterized protein; n=1;
           Ehrlichia canis str. Jake|Rep: Putative uncharacterized
           protein - Ehrlichia canis (strain Jake)
          Length = 134

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   YIYKSSVLTLTSL*NNISR-ELRCRYYCIQNDVTLKI 110
           +IY S++ TL +  NN+S+ +L C+ YC  +D   KI
Sbjct: 41  HIYTSNLKTLNAFNNNMSKIQLLCKIYCYNSDTLNKI 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,243,982
Number of Sequences: 1657284
Number of extensions: 12443543
Number of successful extensions: 23525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23518
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)