Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0510
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 30   1.7  
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)           28   6.8  
SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)          28   9.0  
SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)                   28   9.0  

>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 447  LVI*VCVKVYLITYILFLFIETDRKHGASYH*RLIQPCLKKKD*FV-LVPNG 295
            +V+ V + + LI   + +FI   RKH   YH    +P  K  + F+ L P+G
Sbjct: 1682 IVVVVLLVILLIVAAILVFIWCSRKHRGLYHTHEDEPLAKTNEPFISLQPHG 1733


>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
          Length = 1531

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 424  FHTYSNNQTNIQGVTEFSISTPFFFKGI*D 513
            F +  N+QTN+Q V  F    P ++KGI D
Sbjct: 1180 FMSLDNSQTNVQLVKRFDAWEPVWWKGIND 1209


>SB_18056| Best HMM Match : Xan_ur_permease (HMM E-Value=0.96)
          Length = 651

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 48  NISRELRCRYYCIQNDVTLKISLQLNCTVFLDLPTDIIWFSLCLVPYVLWGVL*RIV*YN 227
           N +   RC  YC  +D+T+ +         ++L    +  S  L+P +   +L     YN
Sbjct: 386 NTNTSARCSKYCTNSDITIFVGNMTTLVSSVNLTRSSL--STTLIPSIRTSIL----SYN 439

Query: 228 IIFAIAPFDSELIPNTYNLYTTYHLALRRTSL 323
               + P  + L+ +  + +T    A   TSL
Sbjct: 440 RTVIVTPNTTRLVTSKISSFTVNVSANSTTSL 471


>SB_14954| Best HMM Match : Pox_TAP (HMM E-Value=9.3)
          Length = 432

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 27  TLTSL*NNISRELRCRYYCIQNDVTLKISLQLNCTVFLDLPTDIIWFSLCLV 182
           +L  L N +      R +CI+ DVTL +  +L       +P D+ +F L L+
Sbjct: 185 SLKCLCNIMYHSAPAREHCIKFDVTLSLLHRLKNWADKSVPQDVFYFDLRLM 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,603,238
Number of Sequences: 59808
Number of extensions: 409391
Number of successful extensions: 803
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)