Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0510
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 481 STPFFFKGI*DLVTKTFRSSLILIFMKTF 567
           S PF ++GI  L  K  RSS ++ F++ F
Sbjct: 536 SKPFKYQGITILEKKPSRSSTLVSFLQPF 564


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 96  VTLKISLQLNCTVFLDLPTDIIWFSLCLVP 185
           V+L IS+ L+ TVF  L  +II  +  +VP
Sbjct: 272 VSLSISILLSLTVFFLLLAEIIPPTSLVVP 301


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 72  RYYCIQNDVTLKISLQLNCTVFLDLPTDII 161
           RYY  Q  +  K+  Q     F+D+P DII
Sbjct: 519 RYY-YQRGILAKVDGQRLVYQFVDVPKDII 547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,638
Number of Sequences: 438
Number of extensions: 3748
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)