Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0510
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30320.1 68416.m03828 hypothetical protein                          28   5.6  

>At3g30320.1 68416.m03828 hypothetical protein
          Length = 695

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 465 DGILXXXXXXXXXXLGPG-N*DL*VKSYFNFHENFLHEKFSTQTINNVQIKYRKP*SEGS 641
           DG L            PG N D+ +++  N  E++L EK+ T  +  V    R+P   GS
Sbjct: 390 DGTLHFSFGLVNHVWEPGENLDVVLRNPINCCEDYLFEKYVTGVLQTVYQGKRRP--IGS 447

Query: 642 WQTKL 656
           W T+L
Sbjct: 448 WITEL 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,277
Number of Sequences: 28952
Number of extensions: 279438
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)