Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0509
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.2  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.9  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +2

Query: 611 SSSARHLWYVSCIRSDRLGPQRTPW 685
           +++  H WY    +  ++GP++  W
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMW 45


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +2

Query: 611 SSSARHLWYVSCIRSDRLGPQRTPW 685
           +++  H WY    +  ++GP++  W
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMW 45


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +1

Query: 397 WSYLHFGMFSTKVLFFTFSTCCVKMF 474
           W  +   M    VL FT+++ C++++
Sbjct: 206 WYSISVFMVPLVVLIFTYTSICIEIW 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,599
Number of Sequences: 336
Number of extensions: 3593
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)