Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0509
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct...    28   5.3  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    27   9.3  

>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
           identical to NADP adrenodoxin-like ferredoxin reductase
           GI:28192433 from [Arabidopsis thaliana]
          Length = 483

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 248 LRSGISPEHESENVNIKNFAHMKIHWSC*FM 340
           +RSG++P+H    + I  F+ +  H  C F+
Sbjct: 62  VRSGVAPDHPETKIAINQFSRVAQHERCSFI 92


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  RQYAPNDTQYIVVSGPSYIAATYGWLRLTKYTKILLS 205
           R +   D   + +S P+  +  YGW R TKY+ I+L+
Sbjct: 62  RVWQIEDHLAVTLSVPNLESLRYGWERRTKYSFIVLN 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,752
Number of Sequences: 28952
Number of extensions: 285285
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)