Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0508
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   2.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.8  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 533 SIPSSSSPFDAQAFSWKAFSSLGH 462
           SI +S +PF  Q F+    S LGH
Sbjct: 245 SIHNSINPFLGQGFAVPGLSPLGH 268


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 77  RKMPLRRAVRYLKNVIEKKECIPFR 151
           R +PLR AV ++ ++I     +P R
Sbjct: 59  RALPLRSAVEHIPDLIADSRRLPLR 83


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 231
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 231
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 231
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +1

Query: 127 KERVYSIPSLQRRRWSLCSSKAVW-HNTGSLAQEIR 231
           K+ +  +PS +R  W  C   A W    GSL +  R
Sbjct: 117 KQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSSR 152


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 237 SSCSY*GTLNQMLTTKL 287
           +SC Y GTL ++LTT +
Sbjct: 201 TSCRYVGTLYRILTTMM 217


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 204 HRVAGPRNPPNSSCSY 251
           H+  GPR+PP+ S  +
Sbjct: 352 HQNFGPRHPPDCSMEF 367


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,493
Number of Sequences: 336
Number of extensions: 2819
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)