Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0508
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 189 2e-49
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 188 4e-49
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.5
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 2.0
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 2.6
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 8.1
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 189 bits (461), Expect = 2e-49
Identities = 86/151 (56%), Positives = 110/151 (72%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
K K+RG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 185 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 364
K+FG TQ RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRA
Sbjct: 73 GKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRA 132
Query: 365 HGRINPYMSSPCHIEVCLSEREDAVARVAPT 457
HGR+ Y+SSP HIE+ ++E E+AV + T
Sbjct: 133 HGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 188 bits (459), Expect = 4e-49
Identities = 86/151 (56%), Positives = 109/151 (72%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
K K+RG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 185 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 364
K+FG TQ RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYRA
Sbjct: 73 GKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRA 132
Query: 365 HGRINPYMSSPCHIEVCLSEREDAVARVAPT 457
HGR+ Y+SSP HIE+ ++E E+AV + T
Sbjct: 133 HGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 29 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 142
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 319 SGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 417
S K RA +T + ++S HQ +H +S PH S S
Sbjct: 340 SDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 206 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 123
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 36 VFTLRTHMRPQWQSGRCRSVVL 101
V+ R + W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 14 KSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 133
+ + +N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 69 EEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 382 LH-VVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAFQEKACASKGEDDE 525
LH ++ LP RS S T +C + P K +E +SKG+D+E
Sbjct: 182 LHSIIKLPDRS-SSFTLQCINESVR----PQSTKVKEEATTSSKGKDEE 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,252
Number of Sequences: 5004
Number of extensions: 45310
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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