Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0508
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   204   5e-53
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   194   4e-50
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   1.5  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   2.7  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   8.2  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  204 bits (497), Expect = 5e-53
 Identities = 99/148 (66%), Positives = 117/148 (79%), Gaps = 1/148 (0%)
 Frame = +2

Query: 5   KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
           KS K+ G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPFRR+ GGVGR AQ
Sbjct: 13  KSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQ 72

Query: 185 AK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
           AK +    QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   RRRTYR
Sbjct: 73  AKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYR 132

Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVAR 445
           AHGRINPYMSSPCHIE+ LSE+E+ V +
Sbjct: 133 AHGRINPYMSSPCHIELILSEKEEPVKK 160


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  194 bits (473), Expect = 4e-50
 Identities = 101/168 (60%), Positives = 120/168 (71%), Gaps = 13/168 (7%)
 Frame = +2

Query: 5   KSCKSRGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 148
           KS K+ G +LRVHFK            NT ETA A+RK+PL +A RYL++VI  K+ IPF
Sbjct: 13  KSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPF 72

Query: 149 RRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQV 325
           RR+ GGVGR AQ K   +  QGRWP KSA F+L LL+NAESNAD K LDVD L + HIQV
Sbjct: 73  RRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQV 132

Query: 326 NRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 469
           N+A   RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV +   T  AP
Sbjct: 133 NQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 149  RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 322
            R  +G V RC           R  K   EF  Q+ + +E  S  + + L +  + I H+ 
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068

Query: 323  VNRAPCLR 346
             + APCLR
Sbjct: 1069 GSSAPCLR 1076


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 110 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 277
           L N++E  E     R     GR A+  Q     +  RWP ++AE      RN E NA+  
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456

Query: 278 -NKTLDVDRLVIDHIQ 322
            ++T++ D    DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 463 CPSEEKAFQEKACASKGEDDE 525
           C  EE+A  EK C   GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,935,898
Number of Sequences: 37544
Number of extensions: 327573
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)