Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0508
(582 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060845-1|AAL28393.1| 186|Drosophila melanogaster GM02242p pro... 271 5e-73
AE014298-945|AAN09183.1| 186|Drosophila melanogaster CG3203-PD,... 271 5e-73
AE014298-944|AAF46194.1| 186|Drosophila melanogaster CG3203-PC,... 271 5e-73
AE014298-943|AAN09182.1| 186|Drosophila melanogaster CG3203-PB,... 271 5e-73
AE014298-942|AAF46195.1| 186|Drosophila melanogaster CG3203-PA,... 271 5e-73
AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-P... 32 0.65
>AY060845-1|AAL28393.1| 186|Drosophila melanogaster GM02242p
protein.
Length = 186
Score = 271 bits (664), Expect = 5e-73
Identities = 125/157 (79%), Positives = 141/157 (89%)
Frame = +2
Query: 2 AKSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 181
AKSCK+RG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGGVGRCA
Sbjct: 12 AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71
Query: 182 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
QAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLRRRTYR
Sbjct: 72 QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYR 131
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 472
AHGRINPYMSSPCH+EV L+E+E+ V++ TDD PA
Sbjct: 132 AHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166
>AE014298-945|AAN09183.1| 186|Drosophila melanogaster CG3203-PD,
isoform D protein.
Length = 186
Score = 271 bits (664), Expect = 5e-73
Identities = 125/157 (79%), Positives = 141/157 (89%)
Frame = +2
Query: 2 AKSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 181
AKSCK+RG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGGVGRCA
Sbjct: 12 AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71
Query: 182 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
QAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLRRRTYR
Sbjct: 72 QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYR 131
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 472
AHGRINPYMSSPCH+EV L+E+E+ V++ TDD PA
Sbjct: 132 AHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166
>AE014298-944|AAF46194.1| 186|Drosophila melanogaster CG3203-PC,
isoform C protein.
Length = 186
Score = 271 bits (664), Expect = 5e-73
Identities = 125/157 (79%), Positives = 141/157 (89%)
Frame = +2
Query: 2 AKSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 181
AKSCK+RG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGGVGRCA
Sbjct: 12 AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71
Query: 182 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
QAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLRRRTYR
Sbjct: 72 QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYR 131
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 472
AHGRINPYMSSPCH+EV L+E+E+ V++ TDD PA
Sbjct: 132 AHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166
>AE014298-943|AAN09182.1| 186|Drosophila melanogaster CG3203-PB,
isoform B protein.
Length = 186
Score = 271 bits (664), Expect = 5e-73
Identities = 125/157 (79%), Positives = 141/157 (89%)
Frame = +2
Query: 2 AKSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 181
AKSCK+RG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGGVGRCA
Sbjct: 12 AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71
Query: 182 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
QAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLRRRTYR
Sbjct: 72 QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYR 131
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 472
AHGRINPYMSSPCH+EV L+E+E+ V++ TDD PA
Sbjct: 132 AHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166
>AE014298-942|AAF46195.1| 186|Drosophila melanogaster CG3203-PA,
isoform A protein.
Length = 186
Score = 271 bits (664), Expect = 5e-73
Identities = 125/157 (79%), Positives = 141/157 (89%)
Frame = +2
Query: 2 AKSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 181
AKSCK+RG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGGVGRCA
Sbjct: 12 AKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCA 71
Query: 182 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
QAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLRRRTYR
Sbjct: 72 QAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYR 131
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 472
AHGRINPYMSSPCH+EV L+E+E+ V++ TDD PA
Sbjct: 132 AHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166
>AE014297-2740|AAF55726.2| 1491|Drosophila melanogaster CG31213-PA
protein.
Length = 1491
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = -1
Query: 561 CINLLFNPYVYSLIIFSF*RASFFLESFFFAGASSVGATLATASSRSL 418
C+ +F Y++SL++F +FF+ SFF S+V AT+ S +L
Sbjct: 98 CLMTIFLVYIHSLVLF-----AFFISSFFSRSLSAVVATILMYFSTAL 140
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,016,734
Number of Sequences: 53049
Number of extensions: 539218
Number of successful extensions: 1633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -