Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0508
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 237 3e-63
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 129 1e-30
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 30 1.4
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 29 3.2
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 28 4.2
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 237 bits (581), Expect = 3e-63
Identities = 112/154 (72%), Positives = 130/154 (84%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
KSCK+RGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF+GG+GR AQ
Sbjct: 15 KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQ 74
Query: 185 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 364
KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRA
Sbjct: 75 TKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRA 134
Query: 365 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 466
HGRINPYMSSPCHIEV L+E+ED V++ PTDDA
Sbjct: 135 HGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 129 bits (312), Expect = 1e-30
Identities = 80/154 (51%), Positives = 95/154 (61%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
KSCK+RGS+LRVHFKNT+E A M LR +P RR + +
Sbjct: 15 KSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRAQAFLNHVKE 55
Query: 185 AKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 364
K+ + L LL+NAESNA+ K LDVD LVI+HI V RA LRRRTYRA
Sbjct: 56 HKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRA 106
Query: 365 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 466
HGRINPYMSSPCHIEV L+E+ED V++ PTDDA
Sbjct: 107 HGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = -2
Query: 539 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 378
L+S + F + A+ +A ++L H+ L HL + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = -3
Query: 241 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLPDC 71
E FG G ++ C S + + + ++ T +++ VF + +ER +P
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 70 HCGLICVLKVNTEV*TTRFAGFR 2
CG +CV + +V F GF+
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFK 112
>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
protein Y46B2A.2 protein.
Length = 1365
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 215 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 376
W K+ + LL AE++ + D+D++V I + P L R +R +G
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547
Query: 377 NPYMSSPCHIEVCLSER 427
NP+ SPC ++ S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -2
Query: 404 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 276
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Frame = -3
Query: 151 TEWN---TLFLFNHVF--EVTNSTTERHLPDCHCGLICVLKVNTEV*TTRFAGFR 2
T W T +++ VF + +ER +P CG +CV + +V F GF+
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFK 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,199,390
Number of Sequences: 27780
Number of extensions: 271799
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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