Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0508
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 206 6e-54
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 206 6e-54
At3g15530.2 68416.m01969 expressed protein 29 1.7
At3g15530.1 68416.m01968 expressed protein 29 1.7
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 28 4.0
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 28 4.0
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 27 6.9
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r... 27 6.9
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 9.1
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 9.1
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 9.1
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 206 bits (504), Expect = 6e-54
Identities = 102/152 (67%), Positives = 120/152 (78%), Gaps = 1/152 (0%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
KSCK+RGS+LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF GVGR AQ
Sbjct: 13 KSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQ 72
Query: 185 AK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
AK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYR
Sbjct: 73 AKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYR 132
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPT 457
AHGRINPYMS+PCHIE+ LSE+E+ V + T
Sbjct: 133 AHGRINPYMSNPCHIELILSEKEEPVKKEPET 164
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 206 bits (504), Expect = 6e-54
Identities = 101/152 (66%), Positives = 120/152 (78%), Gaps = 1/152 (0%)
Frame = +2
Query: 5 KSCKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 184
KSCK+RG++LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF GVGR AQ
Sbjct: 13 KSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQ 72
Query: 185 AK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 361
AK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A RRRTYR
Sbjct: 73 AKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYR 132
Query: 362 AHGRINPYMSSPCHIEVCLSEREDAVARVAPT 457
AHGRINPYMS+PCHIE+ LSE+E+ V + T
Sbjct: 133 AHGRINPYMSNPCHIELILSEKEEPVKKEPET 164
>At3g15530.2 68416.m01969 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1
Query: 552 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 448
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At3g15530.1 68416.m01968 expressed protein
Length = 288
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = -1
Query: 552 LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 448
LLF+ + +SL+ + F + FFL+SFF +GA+ + A
Sbjct: 28 LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 230 RISWASDPVLCQTALLEHSD 171
R+SWASD +LCQ L D
Sbjct: 9 RVSWASDSMLCQVKLFLSDD 28
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 50 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 223
N Y A+ M L V L +E + + C AKQ Q R +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392
Query: 224 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 349
FL L+RN N + ++V I+ +V A L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 198 AQHRVAGPRNPPNSSCSY 251
AQ A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782
>At1g19790.1 68414.m02475 lateral root primordium (LRP)
protein-related similar to lateral root primordium 1
(LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
profile PF05142: Domain of unknown function (DUF702)
Length = 345
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 11 CKSRGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNV 121
CKSRG + + H K+T+ +A R+ + AV K +
Sbjct: 139 CKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRI 175
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 136 VYSIPSLQRRRWSLCSS 186
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 203 TQGRWPKKSAEFLLQLLRNAESN 271
+ RWPK E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 203 TQGRWPKKSAEFLLQLLRNAESN 271
+ RWPK E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,591
Number of Sequences: 28952
Number of extensions: 250515
Number of successful extensions: 687
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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