Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8R4A3 Cluster: Dapper homolog 1; n=5; Theria|Rep: Dapp...    36   0.82 
UniRef50_Q8PNC0 Cluster: Putative uncharacterized protein XAC115...    35   1.9  
UniRef50_Q7NAR8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.5  
UniRef50_UPI0000ECA713 Cluster: Protein phosphatase Slingshot ho...    33   5.8  
UniRef50_Q0S5F4 Cluster: Non-ribosomal peptide synthetase; n=1; ...    33   5.8  
UniRef50_Q3ZZE1 Cluster: PolyA polymerase family protein; n=3; D...    33   7.6  

>UniRef50_Q8R4A3 Cluster: Dapper homolog 1; n=5; Theria|Rep: Dapper
           homolog 1 - Mus musculus (Mouse)
          Length = 778

 Score = 36.3 bits (80), Expect = 0.82
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 333 FKIPVERKHPRSTAPSDAEPFAL--HCGSSAAADPFARRQKNQPLTVLAESVACDEGLGE 160
           F  P +R     T   +++  AL   C + AA +P ++           E   C  GLGE
Sbjct: 369 FSPPKQRSKDSKTDQLESKRLALPESCSAGAAMEPQSKHVPKAAKAASQELTRCQAGLGE 428

Query: 159 *ILRSTALARTSVSNTPGLSPVSTPTSSVNLE 64
            +  S   +  S   +PG  PV+ P  S  L+
Sbjct: 429 SMKESNQASAVSPKTSPGRGPVA-PAESKALQ 459


>UniRef50_Q8PNC0 Cluster: Putative uncharacterized protein XAC1153;
           n=1; Xanthomonas axonopodis pv. citri|Rep: Putative
           uncharacterized protein XAC1153 - Xanthomonas axonopodis
           pv. citri
          Length = 121

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 354 GSSLLNKFKIPVERKHPRSTAPSDAEPFALHCGSSAAADPFARRQKNQPL 205
           GS  L    +P ER  P S AP++       CGS++ A   + R   QPL
Sbjct: 68  GSQTLTPAPLPKERGWPPSPAPAEPAAKTRRCGSTSTASALSARGLTQPL 117


>UniRef50_Q7NAR8 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma gallisepticum|Rep: Putative uncharacterized
           protein - Mycoplasma gallisepticum
          Length = 376

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 26/69 (37%), Positives = 35/69 (50%)
 Frame = +2

Query: 311 LRSTGILNLFKRELPYTFN*LKHLHCSKKHSLVVVVNRSIIYLNDFCQSELAFTVFNFVC 490
           + S+GI+ LF    PY FN   ++  S    LV+     I  LN+F +S LA  V NFV 
Sbjct: 223 IASSGIILLFLN--PYAFNNYSYI-LSYLSILVIYAIFQIKKLNNFVKSILASVVINFVL 279

Query: 491 IGNRLTMYG 517
            G  +  YG
Sbjct: 280 SGLIINGYG 288


>UniRef50_UPI0000ECA713 Cluster: Protein phosphatase Slingshot
           homolog 1 (EC 3.1.3.48) (EC 3.1.3.16) (SSH-1L)
           (hSSH-1L).; n=3; Gallus gallus|Rep: Protein phosphatase
           Slingshot homolog 1 (EC 3.1.3.48) (EC 3.1.3.16) (SSH-1L)
           (hSSH-1L). - Gallus gallus
          Length = 1079

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +1

Query: 94  HGAQTGSVANTGPSKGSASQNLLAEPFVASDGFGEDCERLILLPTCKGIRGCTGPAM 264
           H A  G ++   PS  S +  + +   +A D FGE CE+L      +    CT PA+
Sbjct: 655 HDAVFGILSKVKPSYQSCTDCMYSSGSLAPDSFGEQCEKLNPSSAHRSSTICTQPAL 711


>UniRef50_Q0S5F4 Cluster: Non-ribosomal peptide synthetase; n=1;
            Rhodococcus sp. RHA1|Rep: Non-ribosomal peptide
            synthetase - Rhodococcus sp. (strain RHA1)
          Length = 8344

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 345  LLNKFKIPVERKHPRSTAPSDAEPFALHCGSSAAADPFARRQKNQPLTVLAESVA 181
            L  + ++P +R  P +    D  PF +  G+  A +  ARR    P  V+  ++A
Sbjct: 3263 LPERLQLPTDRPRPATATTPDRVPFTVDAGTHRAVEELARRCSATPFMVVHSALA 3317


>UniRef50_Q3ZZE1 Cluster: PolyA polymerase family protein; n=3;
           Dehalococcoides|Rep: PolyA polymerase family protein -
           Dehalococcoides sp. (strain CBDB1)
          Length = 418

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = +2

Query: 239 SAAALDPQCKANGSASLGAVDLGCLRSTGILNLFKRELPYTFN*LKHLHCSKKHSLV 409
           SA   D QC A   A LG VDL   R  GIL   K+E    FN        +KH ++
Sbjct: 299 SACLRDYQCLAEHLAELGRVDLSPSRLYGILVKCKKEARQAFNIANDNPIVRKHLML 355


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,381,769
Number of Sequences: 1657284
Number of extensions: 12933967
Number of successful extensions: 32123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32096
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)