Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   3.8  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    27   3.8  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   5.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   8.8  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.8  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   8.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   8.8  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 293 PRATRNRL-LYIAGPV-QPRIPLHVGKRINRSQSSPN 189
           P + RNR  +Y+  P   P+IP++ GKR   + SS N
Sbjct: 76  PPSLRNRSSVYLPTPAGPPQIPVNTGKRYTLTSSSAN 112


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 311 SIRGQRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPN 189
           ++RG++P +    L  + G VQP +  H       S SSPN
Sbjct: 58  NMRGKKPSSAARTLSPLTGIVQPYLGSHPFSPTILSPSSPN 98


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 326 ILNLFKRELPYTFN*LKHLHCSKKHSLVVVVNRSIIYLNDF 448
           I+N   + L Y +N L  +H   K S VVV +R  I L DF
Sbjct: 165 IINSMVKGLIYLYNVLHIIHRDLKPSNVVVNSRGEIKLCDF 205


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 428 IIYLNDFCQSELAFTVFN-FVCIGNRLTMYG*RKLSVKFSFNNSQSSNTIVLLRIPYFEP 604
           I+ +N+  + +  +   N +   G+   +YG + L+V  ++   +    +  L I Y E 
Sbjct: 17  IVQVNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITY---ECPLMVPKLEISYSER 73

Query: 605 FKPDVGIESTTSTTAQRSDYCSTESVK 685
             PD G+E  T      + Y    S+K
Sbjct: 74  LAPDSGVE-PTDIEGTLNTYLKDRSIK 99


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 254 DPQCKAN-GSASLGAVDLGCLRS-TGILNLFKRELPYTFN*LKHLHCSKKHSLVVVVNRS 427
           DP   A  G+A  G    G ++  + I  + K  +   +N +     SK+    + +  S
Sbjct: 416 DPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMS 475

Query: 428 IIYLNDFCQSELAFTVFN 481
            + +ND  + +L  T+FN
Sbjct: 476 KLDMNDQTERDLVTTIFN 493


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 333 FKIPVERKHPRSTAPSDAEPFALHCGS 253
           F  P+ R   +ST+P  A PF    GS
Sbjct: 601 FNSPIMRTSTKSTSPIPARPFYAQSGS 627


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 23/101 (22%), Positives = 37/101 (36%)
 Frame = +1

Query: 16  PTSTQQIFWHFFYPYLF*IHRTSRCAHGAQTGSVANTGPSKGSASQNLLAEPFVASDGFG 195
           P +T+Q+FW     Y+  +              + N+  S GS S  +LA       G  
Sbjct: 305 PRATKQVFWRIAIFYVVSLILIGLLVSPDDPRLMGNS--SDGSTSPFVLAIKEANIRGLP 362

Query: 196 EDCERLILLPTCKGIRGCTGPAM*SKRFRVARGR*PRMLTF 318
                +I++ T      CT  A  +     A+G  PR   +
Sbjct: 363 SVFNAVIIISTVSVANSCTFTASRTLHAMAAKGDAPRFFAY 403


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 320 SNVSIRGQRPRATRNRLLY--IAGPVQPRIPLHVGKRINRSQSSPNPSL 180
           +   + GQ    T+NR+ Y   A     +IPL+  +R N  Q+SP P L
Sbjct: 20  NGAEMMGQSELNTQNRIPYNTSANNRNWQIPLYWQQRGNEFQASPPPPL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,990
Number of Sequences: 5004
Number of extensions: 56296
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)