Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0593 + 19078264-19078609,19078724-19082256                       30   2.3  
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745...    29   4.0  
03_05_0867 - 28381891-28383018                                         29   5.3  
03_02_0564 - 9477118-9477200,9477617-9477687,9477799-9477944,947...    29   5.3  

>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 254  PVQPRIPLHVGKRINRSQSSPNPSLA 177
            P QP +PLH+ K + RS S P   +A
Sbjct: 985  PGQPELPLHIAKGLRRSLSRPGLCIA 1010


>03_05_0261 -
           22470565-22470714,22472101-22474270,22474368-22474540,
           22474763-22474924,22476420-22476560
          Length = 931

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 254 PVQPRIPLHVGKRIN-RSQSSPNPSLATKGSASR 156
           P  P  P  VG  +  RS +SP PSL  KGS +R
Sbjct: 7   PPHPTPPEQVGDGVEARSCASPTPSLRRKGSPNR 40


>03_05_0867 - 28381891-28383018
          Length = 375

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 330 KIPVERKHP--RSTAPSDAEPFALHCGSSAAADPFARRQKNQP 208
           K+PV+R+ P  R ++PS ++P        A++DP A++Q  QP
Sbjct: 48  KLPVKRRSPPPRPSSPSSSDP--------ASSDPAAKQQPQQP 82


>03_02_0564 -
           9477118-9477200,9477617-9477687,9477799-9477944,
           9478051-9478128,9478284-9478388,9478647-9478769,
           9479085-9479171,9479272-9479352,9479443-9479512,
           9479604-9479662,9479763-9479831,9479912-9479962,
           9480063-9480107,9480203-9480276,9480544-9480667,
           9480773-9480940
          Length = 477

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 251 VQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEALPLLGP 126
           + PR PL    R +   SSP PS     +A  F  A P+L P
Sbjct: 9   LHPRTPLPHHHRSSFRTSSPRPSRMVCAAAEGFISAAPILLP 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,419
Number of Sequences: 37544
Number of extensions: 346721
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)