Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)                   28   7.1  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              28   7.1  
SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)               28   7.1  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_55132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 197 RTVSG*FFCRRAKGSAAALDPQCKANGSASLGAVDLGCLR---STGILNLFKRELPY 358
           +TV G  +C  +K S +  D Q        L  +  G L+   ST +LNLF    PY
Sbjct: 47  KTVQGKHYCVHSKASKSERDCQRHRYPPIILARMVQGSLKHHESTMVLNLFNNNFPY 103


>SB_54138| Best HMM Match : rve (HMM E-Value=6.8e-24)
          Length = 2160

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 224  GKRINRSQSSPNPSLATKGSASRFCEALPLLGPVLATLPV*AP*AHLLVR 75
            GK+I R  +S + S  T G   R     P+ GPV  ++    P    +VR
Sbjct: 2057 GKKITRRNASKDASQGTTGRPRRLLPQAPVGGPVTVSVTATGPGRGPIVR 2106


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 488 CIGNRLTMYG*RKLSVKFSFNNSQS-SNTIVLLRIPYFEPFKPDVGIESTTSTTAQRSDY 664
           CI    T YG  K+     FNNS   +N +V+L     +    +VG++ T +T+A     
Sbjct: 222 CINFGSTYYGTDKIGSFLIFNNSPDVANFVVILE---EDGEGQEVGVDLTKTTSAMLESQ 278

Query: 665 CSTESVKRFNEL 700
            + + V   N+L
Sbjct: 279 INPDEVGTTNDL 290


>SB_56497| Best HMM Match : Extensin_2 (HMM E-Value=0.16)
          Length = 814

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 224 GKRINRSQSSPNPSLATKGSASRFCEALPLLGPVLATLPV*AP*AHLLVR 75
           GK+I R  +S + S  T G   R     P+ GPV  ++    P    +VR
Sbjct: 711 GKKITRRNASKDASQGTTGRPRRLLPQAPVGGPVTVSVTATGPGRGPIVR 760


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 126 SVSNTPGLSPVSTPTSSVNLE*VGIKKMPEYLLC*GRSVV 7
           S+++   +SPV+TPT+ V  E  G  + P++ LC  RS V
Sbjct: 311 SLNSQNAISPVTTPTAPVERE-EG-SRSPDHALCSNRSPV 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,666,455
Number of Sequences: 59808
Number of extensions: 410868
Number of successful extensions: 1090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)