Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2923|AAM68420.1|  414|Drosophila melanogaster CG9218-PC...    33   0.42 
BT024213-1|ABC86275.1| 1354|Drosophila melanogaster RE29404p pro...    29   5.2  
BT011155-1|AAR82823.1|  745|Drosophila melanogaster AT29074p pro...    29   5.2  
AE014297-634|AAF53998.3| 1354|Drosophila melanogaster CG31146-PD...    29   5.2  

>AE013599-2923|AAM68420.1|  414|Drosophila melanogaster CG9218-PC,
           isoform C protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.42
 Identities = 24/79 (30%), Positives = 37/79 (46%)
 Frame = -1

Query: 323 RSNVSIRGQRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEA 144
           +SN  +R +RP  TR   + +   + P  P+ V +++N  ++ P+ S     S       
Sbjct: 64  KSNDDLRRKRPETTRPNHILLFTIINPFYPITVPEKLNVYKNEPDTSWDYTLSTEP---- 119

Query: 143 LPLLGPVLATLPV*AP*AH 87
            PLLGP  A  P  AP  H
Sbjct: 120 -PLLGPGAAFPPFGAPEYH 137


>BT024213-1|ABC86275.1| 1354|Drosophila melanogaster RE29404p protein.
          Length = 1354

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 299  QRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEALP 138
            + P+ T+N L  I GP+ P+ P    KR+ R   S +   A  GS   F EA+P
Sbjct: 1144 KEPQITQNTL--IVGPIVPKSPASSLKRVKRMPES-SAMTALSGSFQSF-EAVP 1193


>BT011155-1|AAR82823.1|  745|Drosophila melanogaster AT29074p
           protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 299 QRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEALP 138
           + P+ T+N L  I GP+ P+ P    KR+ R   S +   A  GS   F EA+P
Sbjct: 535 KEPQITQNTL--IVGPIVPKSPASSLKRVKRMPES-SAMTALSGSFQSF-EAVP 584


>AE014297-634|AAF53998.3| 1354|Drosophila melanogaster CG31146-PD
            protein.
          Length = 1354

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 299  QRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEALP 138
            + P+ T+N L  I GP+ P+ P    KR+ R   S +   A  GS   F EA+P
Sbjct: 1144 KEPQITQNTL--IVGPIVPKSPASSLKRVKRMPES-SAMTALSGSFQSF-EAVP 1193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,258,420
Number of Sequences: 53049
Number of extensions: 613589
Number of successful extensions: 1869
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3458330568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)