Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical...    29   4.7  
AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical...    28   6.2  
Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 73  HRTSRCAHGAQTGSVANTGPSKGSASQNLLAEPFVASDGFGED 201
           H+     H  + G +A  G    +  QN++++  +  DGFGE+
Sbjct: 382 HKLEHVLHFERDGKLAKEGVEANNPFQNIVSKIDLKGDGFGEE 424


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 485 VCIGNRLTMYG*RKLSV---KFSFNNSQSSNTIVLLRIPYFEPFKPDVGIESTTSTTAQR 655
           V I ++L+    R+++V   KFSF N +  +     ++   +   P+V   S+TST  Q 
Sbjct: 99  VAILSQLSYLNARRMTVLLNKFSFENPKLQDVARRKKLTIVDQNSPEVTRVSSTSTVFQS 158

Query: 656 SDYCSTESVKRF 691
           S Y  +++  RF
Sbjct: 159 SAYDMSDADWRF 170


>Z95621-2|CAB09131.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 374 KHLHCSKKHSLVVV-VNRSIIYLNDFCQSELAFTVFNFVC 490
           KH    +KHS   +  + SIIYL       LAFTVF F C
Sbjct: 282 KHFQRLRKHSSKTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321


>Z78019-9|CAB01457.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK863.2 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 374 KHLHCSKKHSLVVV-VNRSIIYLNDFCQSELAFTVFNFVC 490
           KH    +KHS   +  + SIIYL       LAFTVF F C
Sbjct: 282 KHFQRLRKHSSKTLPFSFSIIYLMGNKHFHLAFTVFIFKC 321


>AL117195-17|CAB60767.1|  534|Caenorhabditis elegans Hypothetical
           protein Y57A10A.24 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 298 NGPERRGTVCFTLRVQCSRGSLCTSAKESTAH 203
           NG    G  C      CS+G+ C   KE TAH
Sbjct: 314 NGENGTGEKCDPAFPACSQGAFCELNKEKTAH 345


>AL032637-21|CAA21618.2|  612|Caenorhabditis elegans Hypothetical
           protein Y43F8C.3 protein.
          Length = 612

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 299 QRPRATRNRLLYIAGPVQPRIPLHVGKRINRSQSSPNPSL 180
           +RPR        I  P QPR+P+   +R+ RS  SP  ++
Sbjct: 572 KRPRPVDFEDDVIEPPPQPRVPVISRRRLTRSSGSPRTNV 611


>Z35595-5|CAA84636.1|  952|Caenorhabditis elegans Hypothetical
           protein C01G6.5 protein.
          Length = 952

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = -3

Query: 351 SSLLNKFKIPVERKHPRSTAPSDAE----PFALHCGSSAAADPFARRQKNQPLTVLAESV 184
           S++++    P+    PR T+   A+    P       S + DP A  + +         +
Sbjct: 583 SAVVSALPTPMNSPLPRVTSSKSAQDVSTPSTTPNPVSRSPDPVALVKDSVSSESTVSGI 642

Query: 183 ACDEGLGE*ILRSTALARTSVSNTPGLSPVSTPTSSV 73
              E +G    +S A    SVSNT   +  S  TSSV
Sbjct: 643 VSLEKIGSPAAQSVASVLPSVSNTTSSTSASLTTSSV 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,063
Number of Sequences: 27780
Number of extensions: 312728
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)