Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 218  RINRSQSSPNPSLATKGSASRFCEALPLLGPVLATL 111
            +I  S SSP  S+ T+G A     A   L P   TL
Sbjct: 1480 KIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTL 1515


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 218  RINRSQSSPNPSLATKGSASRFCEALPLLGPVLATL 111
            +I  S SSP  S+ T+G A     A   L P   TL
Sbjct: 1476 KIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTL 1511


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 300 STAPSDAEPFALHCGSSAAADPFAR 226
           S +P+ + P   H GSSA+  P AR
Sbjct: 61  SPSPTGSSP--QHSGSSASTSPAAR 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,384
Number of Sequences: 438
Number of extensions: 3819
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)