Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0506
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   7.7  

>At3g14140.1 68416.m01788 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to alkB protein
           [Escherichia coli][SP|P05050], alkB [Caulobacter
           crescentus][GI:2055386]; contains Pfam domain PF03171
           2OG-Fe(II) oxygenase superfamily
          Length = 452

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 263 IAGPVQPRIPLHVGKRINRSQSSPNPSLATKGSASRFCEALPLLGP 126
           I G V PRIP+   + + ++       +AT  + ++  + +PLL P
Sbjct: 306 IDGSVPPRIPVEFSQLVEKAIKESKSLVATNSNETKGGDEIPLLLP 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,922
Number of Sequences: 28952
Number of extensions: 284034
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)