Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0505
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 56 2e-08
02_04_0592 - 24171698-24172285 46 2e-05
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 30 2.2
03_01_0608 + 4471738-4472115 29 2.9
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 3.8
07_01_1023 + 8840754-8842988,8843189-8843362 29 5.0
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 29 5.0
11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220... 28 6.6
10_01_0334 - 3680612-3681266,3682253-3682374 28 8.8
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525... 28 8.8
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +2
Query: 5 NFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYIEGTA 178
N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +IEGTA
Sbjct: 6 NLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGHIEGTA 65
Query: 179 KLTDDANKAAKLTVTF 226
D + AKL V F
Sbjct: 66 YRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 46.4 bits (105), Expect = 2e-05
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 4/153 (2%)
Frame = +2
Query: 11 NLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGVKKYIEGTA 178
++ Y G WYEI+ PN + ++G+ + A Y L +G V V N G + YI+GTA
Sbjct: 21 DVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTA 80
Query: 179 KLTDDANKAAKLTVTFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILS 358
D A+ AKL V F V + DY + + +Y + + +WIL
Sbjct: 81 YKADPASDEAKLKVKFYLPPFL---PVIPVVGDYWVLYVDDDYQYALVGEPRRKDLWILC 137
Query: 359 RNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTD 457
R ++ + + KE +++ + D
Sbjct: 138 RQTSMDDEVYGRLLEKAKEEGYDVEKLRKTPQD 170
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 5 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 115
NFN+ + G WY IS N + C E+++EGD
Sbjct: 204 NFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>03_01_0608 + 4471738-4472115
Length = 125
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 383 RRLQASCF*RGSRRTLDETFSCHRICSCKR 294
+RL+A+ RG ++ DE F C R+C+ KR
Sbjct: 32 QRLKAA---RGREKSSDEVFVCERVCTSKR 58
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 53 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 229
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 230 FGEISRDGSVQV 265
+GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 11 NLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGV 154
NL G+W +++S N S K G C A D++ KN+ I+DGV
Sbjct: 302 NLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIVDGV 342
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 302 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 403
+CK D H + + N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589
>11_01_0293 +
2207782-2208148,2208515-2208567,2208622-2208698,
2209377-2209772,2209953-2210111,2210522-2210933
Length = 487
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 713 FNEGKEF*AELTLGKIAKNMVIPVIGWLWSLQSGSTNKTKTYVNLNTVVTIQF 555
F EG ++T+G K + + GWL N +KT+V T + F
Sbjct: 302 FQEGDAVKMDMTVGDAYKRSIQTLFGWL----HNEVNSSKTHVIFRTYAPVHF 350
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 121 EGQERAYHRRRQEVYRRDGQAHRRRQ*SRKAN 216
EGQE+A RRR R+ QA R R+ KA+
Sbjct: 39 EGQEKATQRRRAARMRQRQQAARGREDGEKAS 70
>02_01_0704 -
5254458-5254760,5255091-5255182,5255285-5255501,
5255972-5256068,5256175-5256415,5257100-5257180,
5257236-5257383
Length = 392
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 462 QRKXXXXXXXXXXXXTENIKTEKILEALRGIKLNSNHSIKI 584
QRK TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,155,833
Number of Sequences: 37544
Number of extensions: 316810
Number of successful extensions: 997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -