Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0503
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 167 7e-42
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 95 6e-20
03_05_0223 - 22087076-22087340,22087448-22087726,22087808-220879... 30 2.0
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 29 3.5
04_04_0075 - 22542486-22542882,22543181-22543362,22543452-225436... 29 4.7
02_04_0319 - 22006550-22006952,22007260-22007441,22007522-220077... 29 4.7
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 28 6.2
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 28 8.1
03_01_0641 - 4697273-4697672,4697921-4698102,4698218-4698403,469... 28 8.1
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 167 bits (406), Expect = 7e-42
Identities = 83/190 (43%), Positives = 126/190 (66%), Gaps = 2/190 (1%)
Frame = +1
Query: 55 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 234
++SA+G++++L EP +E+K AL L+++V FWP L+ED+ F Q QLAA
Sbjct: 8 VSSASGLLAMLQEPAAELKLHALANLNSLVHVFWPEISTSVPAIESLYEDEEFDQRQLAA 67
Query: 235 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKR-KAL-FVDS 408
LV SKV+Y+LG +DSL+YALGAG LFD + ++Y T +AKA+D Y R K+L
Sbjct: 68 LVVSKVFYYLGELDDSLSYALGAGPLFDPSEGSDYAQTLLAKALDEYASIRSKSLKAAGE 127
Query: 409 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLSLETRRMDIFEESIMKSDDIPGMLQYAF 588
E +D RLE IV RM +C+ DG+Y+QA+G+SLE +R+D EE+I +SD++ G L Y+
Sbjct: 128 GDEKMDPRLEAIVERMLDKCILDGKYQQAMGMSLECKRLDKLEEAISRSDNLNGSLSYSI 187
Query: 589 TVAMSLLQNK 618
++ + ++
Sbjct: 188 ILSHQYVSHR 197
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 94.7 bits (225), Expect = 6e-20
Identities = 46/117 (39%), Positives = 72/117 (61%)
Frame = +1
Query: 55 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 234
++SA+GI+++L EP E+K AL L+++V F+P L+ED+ F Q QLAA
Sbjct: 9 VSSASGILAMLQEPAEELKLHALASLNSVVHLFYPEISTSIPTIESLYEDEDFEQRQLAA 68
Query: 235 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVD 405
LV SKV+Y+LG D+L+YALGAG LFD++ ++Y + + Q+ + V+
Sbjct: 69 LVVSKVFYYLGELNDALSYALGAGPLFDISEDSDYAHALLGVFLTVQYQQAMGMGVE 125
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 481 QYRQALGLSLETRRMDIFEESIMKSDDIPGMLQYAFTVAMSLLQNK 618
QY+QA+G+ +E RR+D E +I++ D+I G L Y ++ + ++
Sbjct: 115 QYQQAMGMGVECRRLDKLESAIVRCDNIHGALSYCINLSHQYVNHR 160
>03_05_0223 -
22087076-22087340,22087448-22087726,22087808-22087950,
22088029-22088133,22088272-22088465,22088561-22088753,
22088893-22089202,22089335-22089558,22089862-22089990,
22090019-22090078,22090426-22090617,22091463-22091522,
22091606-22091688,22092473-22092611,22092949-22093083,
22093187-22093462
Length = 928
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 538 ESIMKSDDIPGMLQYAFTVAMSLLQNKASAV 630
+ IM D+PG+LQY + L++N++ V
Sbjct: 784 QEIMDKSDLPGLLQYILHEVIELIKNRSDEV 814
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +3
Query: 441 HRESHVPEVP*RWT---IQTSAWLIIGDAPYGY 530
H+E + P WT + +AW IGDAP G+
Sbjct: 62 HKEFKIEHTPGAWTSSITEVAAWDNIGDAPVGF 94
>04_04_0075 -
22542486-22542882,22543181-22543362,22543452-22543637,
22543959-22544057,22546198-22546314,22547739-22547855
Length = 365
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 597 CYCESVLKHSWYIIRFHNRLLE 532
CYC SVL+ ++ I F +LLE
Sbjct: 32 CYCNSVLQALYFCIPFREKLLE 53
>02_04_0319 -
22006550-22006952,22007260-22007441,22007522-22007704,
22008144-22008242,22008999-22009115,22010476-22010739
Length = 415
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 639 GVQYCGSLILEETHCYCESVLKHSWYIIRFHNRLLE 532
G +Y G T CYC SVL+ ++ I F +LLE
Sbjct: 68 GARYFGLENFGNT-CYCNSVLQALYHCIPFREQLLE 102
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 328 RNEYVDTTIAKAIDFYTQKRKAL 396
+N V+TTI + DFY Q+ KA+
Sbjct: 459 KNHEVETTILEDFDFYEQREKAM 481
>06_03_1306 +
29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +1
Query: 358 KAIDFYTQKRKALF---VDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLSLETRRMD 528
K +D TQK + V + ++H L I ++ L RQ++ SLE R+ D
Sbjct: 481 KTVDKETQKVSCNYCGKVVRTYNRLEHHLAGIRGNVYPCSLVPDSVRQSIKSSLEARKKD 540
Query: 529 IFEESI--MKSDDIPGMLQYAFTVA 597
I KS ++P + + T A
Sbjct: 541 WIARKIGKHKSSELPPVRNLSLTSA 565
>03_01_0641 -
4697273-4697672,4697921-4698102,4698218-4698403,
4699287-4699385,4700028-4700144,4700698-4700814
Length = 366
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 597 CYCESVLKHSWYIIRFHNRLLE 532
CYC SVL+ ++ + F +LLE
Sbjct: 32 CYCNSVLQALYFCVPFREQLLE 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,491,586
Number of Sequences: 37544
Number of extensions: 343174
Number of successful extensions: 939
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -