Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0503
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16987| Best HMM Match : No HMM Matches (HMM E-Value=.)             183   1e-46
SB_13370| Best HMM Match : RVT_1 (HMM E-Value=0.0042)                  30   2.1  

>SB_16987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score =  183 bits (446), Expect = 1e-46
 Identities = 94/173 (54%), Positives = 123/173 (71%), Gaps = 2/173 (1%)
 Frame = +1

Query: 46  KMNITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 225
           KM++TSAAGI++LLDE  S++K FAL +L++IVD+FW            L+ED+ F   Q
Sbjct: 2   KMSLTSAAGILALLDESESDLKVFALSKLNSIVDDFWAEISESVDKIEVLYEDESFKHRQ 61

Query: 226 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVD 405
           L+ALVASKVYYHLGAFEDSLTYALGAGDLFDVN  +EYV+TTIAK ID YT +R+    +
Sbjct: 62  LSALVASKVYYHLGAFEDSLTYALGAGDLFDVNGHSEYVETTIAKCIDHYTMQRQKQADN 121

Query: 406 SSAEL-IDHRLEDIVNRMFQRCLEDGQYRQA-LGLSLETRRMDIFEESIMKSD 558
           S  ++ ID RLE IVNRMF+RC +D +Y+Q  + L       DI E+ +  ++
Sbjct: 122 SDEKINIDARLEAIVNRMFRRCFDDCKYKQCFIFLDYPQGVADILEKLVKDNE 174


>SB_13370| Best HMM Match : RVT_1 (HMM E-Value=0.0042)
          Length = 388

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 602 VSSKIRLPQYCTPLLSDFI*GLNGPDY 682
           ++  IR P +CTP L D +  LNG  Y
Sbjct: 215 LNKAIRRPHHCTPTLGDLLPKLNGAKY 241


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,384,497
Number of Sequences: 59808
Number of extensions: 408943
Number of successful extensions: 976
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)