Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0503
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regu... 54 7e-08
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 54 7e-08
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical pr... 28 7.3
Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethion... 28 7.3
Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethion... 28 7.3
AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical ... 28 7.3
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 9.7
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 9.7
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 9.7
>U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform a
protein.
Length = 668
Score = 54.4 bits (125), Expect = 7e-08
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Frame = +1
Query: 58 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 225
++AA I +L+ P S V K LK ++ ++ W L ++ F +H
Sbjct: 16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75
Query: 226 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 384
AAL+ SKVY+ L +E +L +AL GD V A EYV+ I AID Y
Sbjct: 76 SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131
Query: 385 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLSLETRRMDIFEESI 546
K L S I +L D+++R+ R L+ + + L ET + + + +I
Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 54.4 bits (125), Expect = 7e-08
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Frame = +1
Query: 58 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 225
++AA I +L+ P S V K LK ++ ++ W L ++ F +H
Sbjct: 16 SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75
Query: 226 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 384
AAL+ SKVY+ L +E +L +AL GD V A EYV+ I AID Y
Sbjct: 76 SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131
Query: 385 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLSLETRRMDIFEESI 546
K L S I +L D+++R+ R L+ + + L ET + + + +I
Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 73 SPRQT*CSFFFVILFNLF 20
+PR+T CS FF I+F+LF
Sbjct: 224 APRETICSLFFYIIFDLF 241
>Z95559-3|CAB08998.1| 786|Caenorhabditis elegans Hypothetical
protein Y41E3.4 protein.
Length = 786
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 660 YIKSLRSGVQYCGSLILEETHCYCESV--LKHSWYIIRFHNR 541
Y+ R+G Q+C + THC C+S+ + HS F +R
Sbjct: 428 YVPHHRTGNQWCIYPTYDYTHCLCDSIENITHSLCTKEFQSR 469
>Z99171-8|CAB16315.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 669 LRPYI-KSLRSGVQYCGSLILEETHCYCESVLKHS-WYIIRFHNRL 538
L+P + K+ + V+Y S ++ H YC LK WY+ FH +
Sbjct: 137 LQPSLHKNFDAEVEYLDSFFVDG-HAYCLGSLKQDRWYLYTFHREV 181
>Y12500-1|CAA73102.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 669 LRPYI-KSLRSGVQYCGSLILEETHCYCESVLKHS-WYIIRFHNRL 538
L+P + K+ + V+Y S ++ H YC LK WY+ FH +
Sbjct: 137 LQPSLHKNFDAEVEYLDSFFVDG-HAYCLGSLKQDRWYLYTFHREV 181
>Y12499-1|CAA73101.1| 368|Caenorhabditis elegans adenosylmethionine
decarboxylase protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 669 LRPYI-KSLRSGVQYCGSLILEETHCYCESVLKHS-WYIIRFHNRL 538
L+P + K+ + V+Y S ++ H YC LK WY+ FH +
Sbjct: 137 LQPSLHKNFDAEVEYLDSFFVDG-HAYCLGSLKQDRWYLYTFHREV 181
>AL023853-3|CAA19560.1| 368|Caenorhabditis elegans Hypothetical
protein F47G4.7 protein.
Length = 368
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 669 LRPYI-KSLRSGVQYCGSLILEETHCYCESVLKHS-WYIIRFHNRL 538
L+P + K+ + V+Y S ++ H YC LK WY+ FH +
Sbjct: 137 LQPSLHKNFDAEVEYLDSFFVDG-HAYCLGSLKQDRWYLYTFHREV 181
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 43 RKMNITSAAGIISLLDEPMSEVKEFALKR 129
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 43 RKMNITSAAGIISLLDEPMSEVKEFALKR 129
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 43 RKMNITSAAGIISLLDEPMSEVKEFALKR 129
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,500
Number of Sequences: 27780
Number of extensions: 309577
Number of successful extensions: 899
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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