Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0503
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   0.52 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   0.52 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 223 DAGRKFCLRAGFLFSR*IQIFLAKIHRRCC 134
           + G   CL+   LF R    +L +I+  CC
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 223 DAGRKFCLRAGFLFSR*IQIFLAKIHRRCC 134
           + G   CL+   LF R    +L +I+  CC
Sbjct: 224 NTGEYSCLKVDLLFKREFSYYLIQIYIPCC 253


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 162 FWPKFIDDVVQPLQSEFFNFRHGL 91
           F+  F+   +QPL++E FN   G+
Sbjct: 309 FFDNFVTVQIQPLKNELFNANIGI 332


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 396 ESLSLLSVKVDSFCDRSVDIFVSRVHVEKISSPERV 289
           E  + +  +V ++CDR +     ++ V+ ISSP+ V
Sbjct: 328 EGSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAV 363


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 322 NARNEYVDTTIAKAIDFYTQK 384
           NA  EY  TT+ KAI  YT K
Sbjct: 112 NADGEYGVTTMTKAILHYTGK 132


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +3

Query: 312 FRREREKRICRHYDRKSYRLLHSKEK 389
           + R + +R C +Y+R +Y++  + +K
Sbjct: 486 YLRLKARRACMNYERFTYKININSDK 511


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +3

Query: 312 FRREREKRICRHYDRKSYRLLHSKEK 389
           + R + +R C +Y+R +Y++  + +K
Sbjct: 486 YLRLKARRACMNYERFTYKININSDK 511


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +3

Query: 174 YRENRNPAR-RQNFLPASASRISSQ*SVLPFRSI*RFFDIRARGWRSFRREREKRICRHY 350
           Y  + N  R R +    ++SR S + S    R+  R +  + R +     E+EK +    
Sbjct: 210 YATSSNSLRNRTHGFQHTSSRYSRERSCSRDRN--REYREKDRRYEKLHNEKEKLLEERT 267

Query: 351 DRKSYRLLHSKEKGS 395
            RK Y     +EK S
Sbjct: 268 SRKRYSRSREREKKS 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,325
Number of Sequences: 438
Number of extensions: 4274
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)