Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0502
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         31   0.64 
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   2.6  
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644...    25   4.0  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 110 SARQGSEKQNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPRP 277
           ++R+  ++Q A +   RRL+ +   +  S  GS   +  + +VPG + R  + PRP
Sbjct: 97  ASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLLNFYVPGLLTRSMTTPRP 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 190 VCTFQLHLEPPPWPALGVLLFASL 119
           V  FQ  + PPPWPA G   F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>07_03_1293 -
           25563431-25563545,25564078-25564196,25564300-25564467,
           25564565-25564627,25564709-25564816,25565125-25565237,
           25565313-25565609,25565724-25565802,25566116-25566224,
           25566324-25566365,25567023-25567153,25568100-25568648
          Length = 630

 Score = 24.6 bits (51), Expect(2) = 4.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 303 FVHLFDLNFGLGIDLGRNTFPGTHVLGFKFFELP 202
           F+    L  G+   LG N +   H  GFK+F  P
Sbjct: 580 FLGFVKLLHGMSSRLGYNDWAHIHSFGFKYFLQP 613



 Score = 21.8 bits (44), Expect(2) = 4.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 108 FLRSAFFSSRSCWI 67
           FL+ + FSSR  WI
Sbjct: 610 FLQPSIFSSRKLWI 623


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,525,273
Number of Sequences: 37544
Number of extensions: 181064
Number of successful extensions: 536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)