Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0502
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      31   0.65 
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        31   0.65 
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           29   1.5  
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       29   1.5  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            28   3.5  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   6.1  
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 241 REGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 393
           ++  AAK +   +++IE +NK ++  KE +  D   + Y ++ E + N+ L
Sbjct: 3   KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +1

Query: 229 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 393
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +1

Query: 229 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 393
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 152 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMP 271
           PRR   M  KSTD+     +K    ST + G  +RPR  P
Sbjct: 474 PRRLRDMSTKSTDKLKASPTKLRNKSTRMRGGPVRPRDSP 513


>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 101 RRKSARQGSEKQNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 229
           RRKS  +  +++ + SR RRR   K +S +RS K  S+  + S
Sbjct: 317 RRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSREREES 359


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 199 HAPVCTFQLHLEPPPW 152
           HAP+CT ++ L  PPW
Sbjct: 201 HAPLCTKRVRLSKPPW 216


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 KGSSKNLKPSTWVPGKVLRPRSMPR 274
           + +SKNL P  W PG VL+   + R
Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685


>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 469 FFLNKGDQIKLIRRKLCIKYNNLLNLSGS*CGVRV*C 359
           FF  + D +  I+   CI   N+L + G+ CG R  C
Sbjct: 385 FFQQRCDSLLCIKGSKCINPRNILPVDGTPCGNRKWC 421


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 244  EGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKP 369
            E    K DA T  ++E+++K+++ + E +IK+     YD+KP
Sbjct: 1737 EKAIIKHDATT-AELEKIDKLLRGKIEQLIKEHTKKKYDVKP 1777


>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 256  AKIDAETKVKIEEMNKMVQTQKEAVIKD 339
            AK+D E K K   +NKM   ++E +I D
Sbjct: 2455 AKLDGEFKGKYYPLNKMTDEEQEQLIND 2482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,809,467
Number of Sequences: 59808
Number of extensions: 191696
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)