Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0502
         (479 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    26   0.77 
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          22   9.5  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 8/22 (36%), Positives = 18/22 (81%)
 Frame = +1

Query: 271 ETKVKIEEMNKMVQTQKEAVIK 336
           +TK +IEE+NK ++T ++ +++
Sbjct: 738 QTKEEIEELNKKIETLQKTIVE 759


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 50  ASQTQGIQQLLLLKNALRRKSARQGSEKQNA*SRPRRRLKMKLKSTDRSVK 202
           A+  +G ++   +  A RR+   +      A +RP R    + KST R  K
Sbjct: 486 AAAPEGRRRRRAIARARRRRCRPRARRNPPATTRPVRHRPTRRKSTKRGKK 536


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,731
Number of Sequences: 2352
Number of extensions: 6440
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)