Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0502
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    56   1e-08
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 35/103 (33%), Positives = 49/103 (47%)
 Frame = +1

Query: 85  AEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXAKHMGTREGVAAKI 264
           AEKRAAEK++                   EV                +++GT+E + +KI
Sbjct: 14  AEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQQYLGTKEDIESKI 73

Query: 265 DAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 393
             +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 74  RRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116



 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
 Frame = +2

Query: 47  MASQTQGIQQLLL--------LKNALRRKSARQGSEKQNA 142
           MASQTQGIQQLL         +  A +RK  R    KQ A
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEA 40


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 164 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 274
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 158 RRLKMKLKSTDRSVKGSSKNLKPSTWV 238
           +R+K + +STD+   GS K  +P+T V
Sbjct: 344 KRVKSEFQSTDKKRAGSEKQKRPATKV 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,830,796
Number of Sequences: 27780
Number of extensions: 146920
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)