Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0502
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   3.7  
At1g44810.1 68414.m05133 expressed protein  contains Pfam profil...    27   6.5  
At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low s...    27   8.7  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    27   8.7  
At1g30930.1 68414.m03786 F-box family protein contains F-box dom...    27   8.7  

>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 253 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 378
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At1g44810.1 68414.m05133 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 296

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 256 AKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDI 363
           +K+  ETK +IEE  KMV+ ++  ++   ++++ ++
Sbjct: 253 SKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEV 288


>At5g47150.1 68418.m05812 YDG/SRA domain-containing protein low
           similarity to nuclear protein np95 [Mus musculus]
           GI:4220590; contains Pfam profile PF02182: YDG/SRA
           domain
          Length = 328

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 223 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNL--VYDIKPELHI 381
           A+  G      ++ID +T   +E+M K V T+K       +N+  V+  K EL +
Sbjct: 141 ARRGGDFLDATSRIDLKTLTVLEKMGKQVNTEKRIGSVPGINIGDVFQYKTELRV 195


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 172 HLEPPPWPALGVLLFAS 122
           HL  PPWP L +LL +S
Sbjct: 3   HLSSPPWPLLLLLLLSS 19


>At1g30930.1 68414.m03786 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 376

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 451 DQIKLIRRKLCIKYNNLLNLSGS*CGVRV 365
           ++ KL+  K   ++N L+N  G  CGV++
Sbjct: 231 EKFKLVDTKCRSEFNGLINYKGKLCGVKL 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,445,614
Number of Sequences: 28952
Number of extensions: 142113
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)