Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0501
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7F1F8 Cluster: Predicted protein; n=1; Sclerotinia scl...    33   4.9  
UniRef50_A3ILC8 Cluster: Putative restriction enzyme; n=1; Cyano...    33   8.6  
UniRef50_Q23A99 Cluster: Radial spoke head containing protein; n...    33   8.6  

>UniRef50_A7F1F8 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 54

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 165 DRDRYRLRGTLGMKARTKRDRTFFFVLIKFKLH 67
           +R+R R+R  + ++ R +RDR+  FV+ KF LH
Sbjct: 8   ERERVRVRARVRVRMRERRDRSSQFVVRKFSLH 40


>UniRef50_A3ILC8 Cluster: Putative restriction enzyme; n=1;
           Cyanothece sp. CCY 0110|Rep: Putative restriction enzyme
           - Cyanothece sp. CCY 0110
          Length = 540

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -3

Query: 629 IKLIERNRIEFY*KGIYFYVLNYKLK*FCFINSKF---WDKSVGSYY-VWTFLN*FQHVF 462
           I+ I  N+   + +   F  + Y++  F F+ S F   ++KS   YY +++     +H+ 
Sbjct: 73  IQKIVENQFSLWLRKQAFKSITYRMA-FGFLESNFVTHFNKSNIHYYLIFSIQLKSEHIS 131

Query: 461 *KLNSQIIDRTNNCFLFYK 405
            K N Q +++ NN FLF K
Sbjct: 132 YKFNIQTVEKNNNLFLFNK 150


>UniRef50_Q23A99 Cluster: Radial spoke head containing protein; n=2;
           Tetrahymena thermophila|Rep: Radial spoke head
           containing protein - Tetrahymena thermophila SB210
          Length = 500

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 231 IFFLINLLIENYKFKSALLTYSDRDRYRLRGTLGMKARTKRDRTFFFVLIKFKLHCTNPI 52
           I ++ N + E   F+ A + + + + YR+   L + +  K+++    V +  K+HCTN  
Sbjct: 105 IGYVPNFMEEAKWFEWAGVGFGEEESYRIFRALTVLSNAKKEKGLKNVRLWGKIHCTNKD 164

Query: 51  YY 46
           YY
Sbjct: 165 YY 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,585,160
Number of Sequences: 1657284
Number of extensions: 9010579
Number of successful extensions: 14059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14058
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)